Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30773
         (847 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5147| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   1.2  
SB_19190| Best HMM Match : Peptidase_A17 (HMM E-Value=0)               30   2.7  
SB_55427| Best HMM Match : E-MAP-115 (HMM E-Value=0.077)               29   3.6  
SB_54444| Best HMM Match : zf-CCHC (HMM E-Value=0.035)                 29   6.3  
SB_51434| Best HMM Match : rve (HMM E-Value=0.0029)                    28   8.3  
SB_47152| Best HMM Match : Vicilin_N (HMM E-Value=5.4)                 28   8.3  
SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  
SB_31796| Best HMM Match : SAP (HMM E-Value=3.5e-10)                   28   8.3  
SB_8786| Best HMM Match : rve (HMM E-Value=0.0029)                     28   8.3  

>SB_5147| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 347

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -3

Query: 455 RRWLEHREQSMLRKMVIHERLWTSKKILRKQLEK 354
           R W+  +E   + + +    LW S+KIL+ QLEK
Sbjct: 169 RSWISEQELEDIDEEIRRLELWLSRKILKHQLEK 202


>SB_19190| Best HMM Match : Peptidase_A17 (HMM E-Value=0)
          Length = 1829

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +1

Query: 286 PSIFVRRCTIVRLCRISGCDQDHFS 360
           P+   RRC   R C +SGC + H S
Sbjct: 788 PNHISRRCKTYRACLVSGCSEKHHS 812


>SB_55427| Best HMM Match : E-MAP-115 (HMM E-Value=0.077)
          Length = 599

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 20/77 (25%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
 Frame = -3

Query: 509 EQQARSTSQLRV*RGRSMRRWLEHREQSMLRKMVIHERLWTSKKILRKQLEKWSWSQ-PE 333
           + +A    Q  + + R  +  +E REQ +LRK +I +RL    +  R++ ++W   +  E
Sbjct: 139 KMEAEQRRQAELEKQRQQQMEME-REQEVLRKQMIQQRLQAQIEAERQRQKEWQKRKVEE 197

Query: 332 MRHKRTMVQRRTNMLGQ 282
           + +++ + Q   N L Q
Sbjct: 198 LLNQKGLEQDIVNNLKQ 214


>SB_54444| Best HMM Match : zf-CCHC (HMM E-Value=0.035)
          Length = 671

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +1

Query: 286 PSIFVRRCTIVRLCRISGCDQDHFS 360
           P+   RRC   + C +SGC + H S
Sbjct: 157 PNHISRRCKTYKACLVSGCSEKHHS 181


>SB_51434| Best HMM Match : rve (HMM E-Value=0.0029)
          Length = 748

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 20/69 (28%), Positives = 26/69 (37%), Gaps = 6/69 (8%)
 Frame = +1

Query: 454 RILRPRYTRSCDVLRACCSKAIAPAVAYAATCGCLQDHQSWQYLLCHL------TPSTNS 615
           R L P  + S   L ACC  A  PA+       C     ++ Y   +        P TN+
Sbjct: 453 RTLAPALSPSATQLAACCDVAAVPALHLGGLFPCCAYAHAYTYAYTYTYTYTRQPPETNT 512

Query: 616 PWWFLRRTL 642
           P    R TL
Sbjct: 513 PVAMYRDTL 521


>SB_47152| Best HMM Match : Vicilin_N (HMM E-Value=5.4)
          Length = 330

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -2

Query: 219 RLEQHRRQRCGHRERCELSKKRPKTQ 142
           R   H R+ C +R+R  L+ KRPKT+
Sbjct: 192 RHSHHYRRICRYRQRRPLTPKRPKTR 217


>SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2870

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 14/45 (31%), Positives = 18/45 (40%)
 Frame = +2

Query: 11   CTPS*SLLCAL*GSPRWWSPRSCSLGLQPRYRGSCCGN*NHQSSC 145
            C PS    C +  SP    P+SC     P     CC N +  + C
Sbjct: 1781 CLPSCPSTCCIKNSPPVVCPKSCETTCTPDCPVMCCKNSSPATEC 1825


>SB_31796| Best HMM Match : SAP (HMM E-Value=3.5e-10)
          Length = 1029

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 12/48 (25%), Positives = 24/48 (50%)
 Frame = +1

Query: 445 SHRRILRPRYTRSCDVLRACCSKAIAPAVAYAATCGCLQDHQSWQYLL 588
           +H++IL  R  +SC   R CC + +   +    T G +    ++ +L+
Sbjct: 23  THQQILNNREGKSCTTTR-CCRRCVGKKITTQKTTGAVDKSGNYAWLV 69


>SB_8786| Best HMM Match : rve (HMM E-Value=0.0029)
          Length = 946

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 20/69 (28%), Positives = 26/69 (37%), Gaps = 6/69 (8%)
 Frame = +1

Query: 454 RILRPRYTRSCDVLRACCSKAIAPAVAYAATCGCLQDHQSWQYLLCHL------TPSTNS 615
           R L P  + S   L ACC  A  PA+       C     ++ Y   +        P TN+
Sbjct: 664 RTLAPALSPSATQLAACCDVAAVPALHLGGLFPCCAYAHAYTYAYTYTYTYTRQPPETNT 723

Query: 616 PWWFLRRTL 642
           P    R TL
Sbjct: 724 PVAMYRDTL 732


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,926,234
Number of Sequences: 59808
Number of extensions: 514002
Number of successful extensions: 1524
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1405
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1523
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2395401800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)