Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30773
         (847 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g13390.2 68414.m01559 expressed protein                             29   2.9  
At1g13390.1 68414.m01558 expressed protein                             29   2.9  
At3g03480.1 68416.m00346 transferase family protein similar to h...    29   3.9  
At5g47850.1 68418.m05912 protein kinase, putative contains simil...    29   5.1  
At4g01290.1 68417.m00170 expressed protein                             29   5.1  
At1g47510.1 68414.m05273 endonuclease/exonuclease/phosphatase fa...    29   5.1  
At5g18320.1 68418.m02156 armadillo/beta-catenin repeat family pr...    28   6.8  

>At1g13390.2 68414.m01559 expressed protein
          Length = 176

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 15/35 (42%), Positives = 17/35 (48%)
 Frame = +3

Query: 396 PLMDHHLSQHTLLTVLQPSPHTPPTLHPQLRRTPR 500
           PL    L +  LL V  PSP TP    PQ   +PR
Sbjct: 105 PLTKDSLFREELLMVASPSPSTPRATKPQPPSSPR 139


>At1g13390.1 68414.m01558 expressed protein
          Length = 176

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 15/35 (42%), Positives = 17/35 (48%)
 Frame = +3

Query: 396 PLMDHHLSQHTLLTVLQPSPHTPPTLHPQLRRTPR 500
           PL    L +  LL V  PSP TP    PQ   +PR
Sbjct: 105 PLTKDSLFREELLMVASPSPSTPRATKPQPPSSPR 139


>At3g03480.1 68416.m00346 transferase family protein similar to
           hypersensitivity-related gene GB:CAA64636 [Nicotiana
           tabacum]; contains Pfam transferase family domain
           PF00248
          Length = 454

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +1

Query: 688 LKSLCRPCCGYLTPAGPPSW 747
           LKSLC   CG   P+ PP W
Sbjct: 186 LKSLCELACGLHAPSVPPVW 205


>At5g47850.1 68418.m05912 protein kinase, putative contains
           similarity to cytokinin-regulated kinase 1 [Nicotiana
           tabacum] gi|10998537|gb|AAG25966; contains protein
           kinase domain, Pfam:PF00069
          Length = 751

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -1

Query: 349 LGHNRRCGISVRWCSGVRICWASS 278
           +G +R CG  VRW +G  +CW ++
Sbjct: 231 VGEDRGCG--VRWSNGTVVCWGNN 252


>At4g01290.1 68417.m00170 expressed protein 
          Length = 991

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 15/32 (46%), Positives = 18/32 (56%)
 Frame = -1

Query: 832 PPGAGVSSLPTKGNQLEVGGLRQELAYLATTG 737
           PPG GV +LP  GN L VGG      Y++  G
Sbjct: 720 PPG-GVLALPEDGNLLAVGGHANPSKYMSFPG 750


>At1g47510.1 68414.m05273 endonuclease/exonuclease/phosphatase
           family protein similar to SP|P32019 Type II
           inositol-1,4,5-trisphosphate 5-phosphatase  precursor
           (EC 3.1.3.56) {Homo sapiens}; contains Pfam profile
           PF03372: Endonuclease/Exonuclease/phosphatase family
          Length = 334

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = -1

Query: 808 LPTKGNQLEVGGLRQELAYLATTGGQPALGSHSRGGIKTLVTIGAAA 668
           +PT GN+  + GL++   Y  +  G  A  S S  GIKT+  + + +
Sbjct: 1   MPTMGNKNSMCGLKRFPNYKKSPIGSFAKNSSSHDGIKTIEAVNSCS 47


>At5g18320.1 68418.m02156 armadillo/beta-catenin repeat family
           protein / U-box domain-containing protein contains Pfam
           domain, PF00514: Armadillo/beta-catenin-like repeats and
           Pfam, PF04564: U-box domain
          Length = 458

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 10/38 (26%), Positives = 17/38 (44%)
 Frame = -3

Query: 464 RSMRRWLEHREQSMLRKMVIHERLWTSKKILRKQLEKW 351
           R +  WL+H       K V+  RLW    ++   + +W
Sbjct: 100 RYITEWLKHERTCPKTKQVLSHRLWIPNHLISDLITQW 137


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,280,066
Number of Sequences: 28952
Number of extensions: 347600
Number of successful extensions: 990
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 948
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 990
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1960634400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)