Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30772
         (825 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch...    37   0.004
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    29   0.80 
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces...    29   1.1  
SPCP1E11.08 |||ribosome biogenesis protein Nsa2 |Schizosaccharom...    28   1.4  
SPCC736.13 |||short chain dehydrogenase|Schizosaccharomyces pomb...    28   1.8  
SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyce...    27   2.4  
SPAC27F1.02c |cdc8|fus4|tropomyosin|Schizosaccharomyces pombe|ch...    27   2.4  
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces...    27   2.4  
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ...    27   3.2  
SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   5.6  
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc...    26   7.5  
SPCC622.05 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual         26   7.5  
SPAC23H3.15c ||SPAC25H1.01c|sequence orphan|Schizosaccharomyces ...    26   7.5  
SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   9.9  
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce...    25   9.9  

>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 750

 Score = 36.7 bits (81), Expect = 0.004
 Identities = 30/86 (34%), Positives = 50/86 (58%), Gaps = 7/86 (8%)
 Frame = +2

Query: 257 ERNKELETALRQHQNVIEDQAQEIEYLTKQTVALRE-VNDS-RLRIY-EQLELSIQDLER 427
           E+N E +  L++ +  ++++ +E+  L K    LRE   DS +LR+  EQLEL  QDL++
Sbjct: 495 EQNNEFDRQLKEQEEDLQNKEEELTELRK---LLREQTQDSQKLRLLVEQLELERQDLKQ 551

Query: 428 A--NH--RLAVDHAADKKHIKSLCSN 493
           A  NH   L+ D+    K ++S  +N
Sbjct: 552 AGENHYSNLSSDYETQIKSLESSLTN 577


>SPCC162.08c |nup211||nuclear pore complex associated
            protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 29.1 bits (62), Expect = 0.80
 Identities = 19/92 (20%), Positives = 44/92 (47%)
 Frame = +2

Query: 254  IERNKELETALRQHQNVIEDQAQEIEYLTKQTVALREVNDSRLRIYEQLELSIQDLERAN 433
            + R + L  +  Q    I   +QE++ L +    LR+ ND++L   ++LE  ++ L  + 
Sbjct: 1245 LNRLQSLPVSNDQTDTPIISGSQEVQLLYESNSVLRKDNDAKLGKIQELEKEVEKLNASL 1304

Query: 434  HRLAVDHAADKKHIKSLCSNIDTVEPNAKNYK 529
            + L  +    K  I +  ++++ ++     +K
Sbjct: 1305 NPLQTEINELKAEIGAKTASLNLMKEYNSRWK 1336


>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1727

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 25/97 (25%), Positives = 46/97 (47%)
 Frame = +2

Query: 257  ERNKELETALRQHQNVIEDQAQEIEYLTKQTVALREVNDSRLRIYEQLELSIQDLERANH 436
            E NK L   L +++ VI +  ++IE L K  +A   +N       EQLE  +Q  + A  
Sbjct: 1237 ESNKSLRENLERNEEVITELREKIETL-KTDLANFRLNK------EQLESQLQTEKAAVK 1289

Query: 437  RLAVDHAADKKHIKSLCSNIDTVEPNAKNYKRLWTNL 547
            +L   +   K+H + +  ++++    + +  RL   L
Sbjct: 1290 KLENSNEEYKRHNQEILLSLNSSTSTSSDASRLKNEL 1326


>SPCP1E11.08 |||ribosome biogenesis protein Nsa2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 260

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
 Frame = +2

Query: 125 NVRSNGSGEEEIRWKRRAGARRSHLTSLYARRFATGGRTRENPIERNKE---LETALRQH 295
           ++R +G   +    KR+  AR +H  SLYA++   G + +    +R KE   ++  ++QH
Sbjct: 10  SIRKHGRRFDHEERKRKKAAREAHDASLYAQK-TRGIKAKLYQEKRRKEKIQMKKTIKQH 68

Query: 296 Q 298
           +
Sbjct: 69  E 69


>SPCC736.13 |||short chain dehydrogenase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 339

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = +3

Query: 426 ELTTD*LSIMQPTRNTLSHYAQTLTLWSQMRRTTKDC 536
           ELT D   +   T N LSHY  T  L   +RRT ++C
Sbjct: 137 ELTKDGYELQIQT-NYLSHYLFTELLLPTLRRTAEEC 172


>SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 855

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +2

Query: 305 IEDQAQEIEYLTKQTVALREVNDSRLRIYEQLELSIQ 415
           I+ + Q I+ +   T  L   NDSR+RIY   + S++
Sbjct: 447 IQTRTQMIDNIAGDTEMLVTTNDSRIRIYNLRDKSLE 483


>SPAC27F1.02c |cdc8|fus4|tropomyosin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 161

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 2/88 (2%)
 Frame = +2

Query: 167 KRRAGARRSHLTSLYARRFATGGRTRENPIERN-KELE-TALRQHQNVIEDQAQEIEYLT 340
           + +  A R+      AR  A   + +E  ++ + KE E  +L +     E Q +E+E  T
Sbjct: 5   REKINAARAETDEAVARAEAAEAKLKEVELQLSLKEQEYESLSRKSEAAESQLEELEEET 64

Query: 341 KQTVALREVNDSRLRIYEQLELSIQDLE 424
           KQ     +  D +    EQL   ++ LE
Sbjct: 65  KQLRLKADNEDIQKTEAEQLSRKVELLE 92


>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1526

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
 Frame = +2

Query: 260  RNKELETALRQHQNVIEDQAQEIEYLTKQTVALREVNDSRL---RIYEQLELSIQDLE 424
            +NKELE  +++  N I+   +E+E   ++   L + +   +    I+E L L + DLE
Sbjct: 1111 KNKELEAKVKECLNNIKSLTKELENKEEKCQNLSDASLKYIELQEIHENLLLKVSDLE 1168


>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1044

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 16/62 (25%), Positives = 29/62 (46%)
 Frame = +2

Query: 257  ERNKELETALRQHQNVIEDQAQEIEYLTKQTVALREVNDSRLRIYEQLELSIQDLERANH 436
            E+ KE+  AL +    +  + +EIE L    + L+  + +   + +    +I DLE  N 
Sbjct: 933  EKFKEVSQALAEANEKLNARDEEIERLKVDIIGLQNASLNMQSLKDSDNRTISDLESKNK 992

Query: 437  RL 442
             L
Sbjct: 993  EL 994


>SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 575

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +3

Query: 294 IKMLLKIKHKKSNILQSKRLLCE 362
           ++ L K +++KSN+L + R LCE
Sbjct: 266 LESLAKSQYRKSNVLAADRSLCE 288


>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 781

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 14/32 (43%), Positives = 15/32 (46%)
 Frame = +1

Query: 235 PNSGKPYRTQQGTRDSPSPASKCY*RSSTRNR 330
           P+  KP     G R  PSP S     SS RNR
Sbjct: 233 PSKAKPMEINNGYRKKPSPLSP---NSSIRNR 261


>SPCC622.05 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 115

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -1

Query: 150 SPDPLLLTLFTVYGTMRYIDVF 85
           SP P L  LF+V G +  +DVF
Sbjct: 48  SPSPFLRWLFSVLGVLMSMDVF 69


>SPAC23H3.15c ||SPAC25H1.01c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 325

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 13/54 (24%), Positives = 28/54 (51%)
 Frame = +2

Query: 122 NNVRSNGSGEEEIRWKRRAGARRSHLTSLYARRFATGGRTRENPIERNKELETA 283
           N+V S    + ++R    + +RR   +S  + +++TGG    +   RN++  T+
Sbjct: 83  NSVESRKKEQSDVRGGDTSYSRRHDDSSYSSNKYSTGGNDSYSSGGRNEDYSTS 136


>SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 642

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
 Frame = +2

Query: 260 RNKELETALRQHQNVIEDQAQEIEYLTKQTVALREVNDSRLRIYEQ-LELSIQDLERANH 436
           R  EL+  L Q    ++    +++   K   A +   +S L   +  ++ +  +LERA H
Sbjct: 191 REAELKHRLAQANADVDVANSKLDIALKNEAAWKAERESSLAHQKAVIDSARAELERARH 250

Query: 437 RLAVDHAADKK 469
             AV  A  KK
Sbjct: 251 EAAVADATYKK 261


>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2104

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 18/63 (28%), Positives = 31/63 (49%)
 Frame = +3

Query: 168  NEELEQDDLTSRRCMLDDLQLAAELGKTLSNATRNSRQPFASIKMLLKIKHKKSNILQSK 347
            N+ L +D  T  R   +  +   E+ + L+    +S +PF  I+M  ++   KSN+ Q  
Sbjct: 1841 NQTLRKDQDTLLRENRNLERKLHEVSEQLNKKFDSSARPFDEIEMEKEVLTLKSNLAQKD 1900

Query: 348  RLL 356
             LL
Sbjct: 1901 DLL 1903


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,025,925
Number of Sequences: 5004
Number of extensions: 56254
Number of successful extensions: 176
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 404442380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)