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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30772
         (825 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0829 - 20871810-20872011,20873226-20873359,20873480-208773...    31   1.1  
02_01_0642 - 4803464-4805665,4806231-4806320                           30   1.9  
03_02_0507 - 8999902-9000649,9001106-9001225,9001314-9001394,900...    30   2.6  
07_01_0987 + 8320205-8320472,8321549-8321690,8321773-8321893,832...    29   3.4  
07_01_0389 - 2915191-2915604,2915696-2915752,2915867-2915922,291...    29   3.4  
03_01_0423 + 3240224-3240394,3241464-3241628,3242322-3242339,324...    29   3.4  
08_02_1453 - 27199228-27200579,27200712-27202646,27202905-272029...    29   5.9  
04_04_1650 - 35051728-35051823,35052054-35052162,35052270-350524...    29   5.9  
08_01_0655 + 5646567-5646650,5646675-5647697,5648227-5648382,564...    28   7.8  
07_01_0020 - 127855-129156,129240-129365,129811-129865,130047-13...    28   7.8  

>10_08_0829 - 20871810-20872011,20873226-20873359,20873480-20877313,
            20878057-20878177,20878414-20878451,20879096-20879218,
            20879308-20879505,20880270-20880356
          Length = 1578

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 24/107 (22%), Positives = 48/107 (44%), Gaps = 1/107 (0%)
 Frame = +2

Query: 212  ARRFATGGRTRENPIERNK-ELETALRQHQNVIEDQAQEIEYLTKQTVALREVNDSRLRI 388
            +R   T  +     +E  K EL+  + + +++I +   E+E +  Q V L+E      R 
Sbjct: 843  SRSLITNLKDELEQVEAQKVELKLQMDESRSLITNLKDELEQVEAQKVELKENQLESHRR 902

Query: 389  YEQLELSIQDLERANHRLAVDHAADKKHIKSLCSNIDTVEPNAKNYK 529
              +++   + L R+N +L     A   H+   C ++ T+  + K  K
Sbjct: 903  LSEVQEDSEALRRSNAKL----QATVDHVVEECKSLQTLTADLKKQK 945


>02_01_0642 - 4803464-4805665,4806231-4806320
          Length = 763

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 19/89 (21%), Positives = 42/89 (47%)
 Frame = +2

Query: 269 ELETALRQHQNVIEDQAQEIEYLTKQTVALREVNDSRLRIYEQLELSIQDLERANHRLAV 448
           E   A  Q +  I++   EI+   ++ +     N+ R    ++L+++ Q+LER N     
Sbjct: 240 EANQAAEQQEATIKELRSEIK---RKEIDFSRSNELRKANEQKLKIAEQELERQNMGWLA 296

Query: 449 DHAADKKHIKSLCSNIDTVEPNAKNYKRL 535
                K+  +  C ++D ++    ++KR+
Sbjct: 297 AQKELKEVAQLACKDMDGIKDTVSDFKRV 325


>03_02_0507 -
           8999902-9000649,9001106-9001225,9001314-9001394,
           9001591-9001613
          Length = 323

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 22/102 (21%), Positives = 45/102 (44%)
 Frame = +2

Query: 122 NNVRSNGSGEEEIRWKRRAGARRSHLTSLYARRFATGGRTRENPIERNKELETALRQHQN 301
           NN+ S  SG EE    R    +R H  S   +R         N    +KE +   ++ + 
Sbjct: 176 NNIDSGSSGSEESGKHRSHSEKRKHKKSRKHKRRYDDSSDESNSESDDKESKRRRKEEKR 235

Query: 302 VIEDQAQEIEYLTKQTVALREVNDSRLRIYEQLELSIQDLER 427
           + +++ +       +  A R+ +  +L+  E ++++  DLE+
Sbjct: 236 LRKEERRRRREERHRRKADRQASKLKLKHAETVDMA-SDLEK 276


>07_01_0987 +
           8320205-8320472,8321549-8321690,8321773-8321893,
           8322190-8322264,8322784-8322846,8322934-8323086
          Length = 273

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 16/64 (25%), Positives = 28/64 (43%)
 Frame = +2

Query: 209 YARRFATGGRTRENPIERNKELETALRQHQNVIEDQAQEIEYLTKQTVALREVNDSRLRI 388
           + +R+  G          NKE    ++QH   + D ++EIE   K    + EV +  L  
Sbjct: 115 FMKRYGGGKADTALAKSLNKEYGPVIKQHMQYVLDHSEEIEKTLKVQAQVSEVKNIMLEN 174

Query: 389 YEQL 400
            E++
Sbjct: 175 IEKV 178


>07_01_0389 - 2915191-2915604,2915696-2915752,2915867-2915922,
            2916053-2916113,2916243-2916365,2916505-2916537,
            2916617-2916709,2916839-2916934,2917025-2917203,
            2917344-2917530,2918051-2918184,2918311-2918518,
            2918598-2918633,2918785-2919241,2919633-2919736,
            2920489-2920569,2920646-2920697,2920837-2920876,
            2920991-2921085,2921241-2921383,2921899-2922006,
            2922120-2922221,2922302-2922348,2922425-2922554,
            2923173-2923304,2923404-2923616,2923709-2923963,
            2924053-2924799
          Length = 1460

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
 Frame = +2

Query: 206  LYARRFATGGRTRENPIERNKELETALRQHQNVIEDQAQEIEYLTK--QTVALREVNDSR 379
            ++A     GGR  +  ++    LET   QH ++I    + ++  TK  QT+        R
Sbjct: 1268 MHAMAVKHGGRFVDTFLKAFNFLETHFGQHNDIILQMIKSLQKATKTIQTICAEAKGHKR 1327

Query: 380  LRIYEQLELSIQDLER 427
              I  ++ ++ + LER
Sbjct: 1328 TMITSKIPVAKRSLER 1343


>03_01_0423 + 3240224-3240394,3241464-3241628,3242322-3242339,
            3242494-3242836,3244138-3248540,3248928-3249107,
            3249108-3250892,3251055-3252173
          Length = 2727

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 27/95 (28%), Positives = 43/95 (45%), Gaps = 3/95 (3%)
 Frame = +2

Query: 257  ERNKELETALRQHQNVIEDQAQEIEYLTKQTVALRE---VNDSRLRIYEQLELSIQDLER 427
            ERN+EL   LR  +  +ED       L K+   L E   V D+  R+          L  
Sbjct: 2159 ERNQELCRVLRDLEVAVEDAEGVKVDLEKKITTLTERGAVQDNETRL----------LRE 2208

Query: 428  ANHRLAVDHAADKKHIKSLCSNIDTVEPNAKNYKR 532
            AN+ L V+    ++  +SL S  +T+   A+ ++R
Sbjct: 2209 ANNTLQVEVGIHEQKEESLMSTFETMRKEAEQHER 2243


>08_02_1453 -
           27199228-27200579,27200712-27202646,27202905-27202966,
           27203525-27203545,27204305-27204344,27204345-27204792,
           27204866-27204964,27205071-27205394,27205446-27205574,
           27205657-27205875,27205976-27206194,27206436-27206669,
           27206773-27206943,27207466-27207577,27207955-27208010,
           27208083-27208181,27208901-27209134,27209258-27209311,
           27209363-27209422
          Length = 1955

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 18/67 (26%), Positives = 31/67 (46%)
 Frame = +2

Query: 257 ERNKELETALRQHQNVIEDQAQEIEYLTKQTVALREVNDSRLRIYEQLELSIQDLERANH 436
           E+ KEL T  R+  N   ++AQ ++ +      LRE     L + EQ   +  ++   + 
Sbjct: 159 EQTKELATFRRERDNSEAERAQHLKQIHDLQEHLREKESQMLALEEQHRAAQDNIIYKDE 218

Query: 437 RLAVDHA 457
           +L   HA
Sbjct: 219 QLREAHA 225


>04_04_1650 -
           35051728-35051823,35052054-35052162,35052270-35052416,
           35052516-35052637,35052726-35052825,35052895-35053095,
           35053202-35053407,35053778-35053803,35054239-35054327,
           35054427-35054635,35055577-35055672,35055754-35055924
          Length = 523

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = +2

Query: 311 DQAQEIEYLTKQTVALREVNDSRLRIYEQLELSIQDLERANHRL 442
           D+   +EY     +  R  ND   R+ E L  +I  LE   HRL
Sbjct: 111 DKLTSVEYFFTSKIRCRVGNDVHERVNELLSKAIHGLENEFHRL 154


>08_01_0655 +
           5646567-5646650,5646675-5647697,5648227-5648382,
           5648499-5648529,5648636-5648808
          Length = 488

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 15/52 (28%), Positives = 26/52 (50%)
 Frame = +3

Query: 150 KKKFGGNEELEQDDLTSRRCMLDDLQLAAELGKTLSNATRNSRQPFASIKML 305
           KKKF G + L  D++         L+L A+ G+ + N    +   F+++K L
Sbjct: 337 KKKFNGGKVLGGDNVLHSLSNARSLELLADAGEVILNRELKTCPTFSNLKTL 388


>07_01_0020 -
           127855-129156,129240-129365,129811-129865,130047-130177
          Length = 537

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 16/88 (18%), Positives = 37/88 (42%)
 Frame = +2

Query: 143 SGEEEIRWKRRAGARRSHLTSLYARRFATGGRTRENPIERNKELETALRQHQNVIEDQAQ 322
           +  EE++ +R              +  A   +  E   +  + +E A  +    +E+   
Sbjct: 183 AAREELKLERHHRRELEGANGKLVKEVARARQRVETERKARELMEEACEELSKEVEEDQA 242

Query: 323 EIEYLTKQTVALREVNDSRLRIYEQLEL 406
           E+E L ++ V++RE  +   R+ +  E+
Sbjct: 243 EVEALRRECVSMREEMEEERRMLQMAEV 270


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,939,142
Number of Sequences: 37544
Number of extensions: 383278
Number of successful extensions: 1024
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 999
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1023
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2268190812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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