BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdS30772 (825 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 10_08_0829 - 20871810-20872011,20873226-20873359,20873480-208773... 31 1.1 02_01_0642 - 4803464-4805665,4806231-4806320 30 1.9 03_02_0507 - 8999902-9000649,9001106-9001225,9001314-9001394,900... 30 2.6 07_01_0987 + 8320205-8320472,8321549-8321690,8321773-8321893,832... 29 3.4 07_01_0389 - 2915191-2915604,2915696-2915752,2915867-2915922,291... 29 3.4 03_01_0423 + 3240224-3240394,3241464-3241628,3242322-3242339,324... 29 3.4 08_02_1453 - 27199228-27200579,27200712-27202646,27202905-272029... 29 5.9 04_04_1650 - 35051728-35051823,35052054-35052162,35052270-350524... 29 5.9 08_01_0655 + 5646567-5646650,5646675-5647697,5648227-5648382,564... 28 7.8 07_01_0020 - 127855-129156,129240-129365,129811-129865,130047-13... 28 7.8 >10_08_0829 - 20871810-20872011,20873226-20873359,20873480-20877313, 20878057-20878177,20878414-20878451,20879096-20879218, 20879308-20879505,20880270-20880356 Length = 1578 Score = 31.1 bits (67), Expect = 1.1 Identities = 24/107 (22%), Positives = 48/107 (44%), Gaps = 1/107 (0%) Frame = +2 Query: 212 ARRFATGGRTRENPIERNK-ELETALRQHQNVIEDQAQEIEYLTKQTVALREVNDSRLRI 388 +R T + +E K EL+ + + +++I + E+E + Q V L+E R Sbjct: 843 SRSLITNLKDELEQVEAQKVELKLQMDESRSLITNLKDELEQVEAQKVELKENQLESHRR 902 Query: 389 YEQLELSIQDLERANHRLAVDHAADKKHIKSLCSNIDTVEPNAKNYK 529 +++ + L R+N +L A H+ C ++ T+ + K K Sbjct: 903 LSEVQEDSEALRRSNAKL----QATVDHVVEECKSLQTLTADLKKQK 945 >02_01_0642 - 4803464-4805665,4806231-4806320 Length = 763 Score = 30.3 bits (65), Expect = 1.9 Identities = 19/89 (21%), Positives = 42/89 (47%) Frame = +2 Query: 269 ELETALRQHQNVIEDQAQEIEYLTKQTVALREVNDSRLRIYEQLELSIQDLERANHRLAV 448 E A Q + I++ EI+ ++ + N+ R ++L+++ Q+LER N Sbjct: 240 EANQAAEQQEATIKELRSEIK---RKEIDFSRSNELRKANEQKLKIAEQELERQNMGWLA 296 Query: 449 DHAADKKHIKSLCSNIDTVEPNAKNYKRL 535 K+ + C ++D ++ ++KR+ Sbjct: 297 AQKELKEVAQLACKDMDGIKDTVSDFKRV 325 >03_02_0507 - 8999902-9000649,9001106-9001225,9001314-9001394, 9001591-9001613 Length = 323 Score = 29.9 bits (64), Expect = 2.6 Identities = 22/102 (21%), Positives = 45/102 (44%) Frame = +2 Query: 122 NNVRSNGSGEEEIRWKRRAGARRSHLTSLYARRFATGGRTRENPIERNKELETALRQHQN 301 NN+ S SG EE R +R H S +R N +KE + ++ + Sbjct: 176 NNIDSGSSGSEESGKHRSHSEKRKHKKSRKHKRRYDDSSDESNSESDDKESKRRRKEEKR 235 Query: 302 VIEDQAQEIEYLTKQTVALREVNDSRLRIYEQLELSIQDLER 427 + +++ + + A R+ + +L+ E ++++ DLE+ Sbjct: 236 LRKEERRRRREERHRRKADRQASKLKLKHAETVDMA-SDLEK 276 >07_01_0987 + 8320205-8320472,8321549-8321690,8321773-8321893, 8322190-8322264,8322784-8322846,8322934-8323086 Length = 273 Score = 29.5 bits (63), Expect = 3.4 Identities = 16/64 (25%), Positives = 28/64 (43%) Frame = +2 Query: 209 YARRFATGGRTRENPIERNKELETALRQHQNVIEDQAQEIEYLTKQTVALREVNDSRLRI 388 + +R+ G NKE ++QH + D ++EIE K + EV + L Sbjct: 115 FMKRYGGGKADTALAKSLNKEYGPVIKQHMQYVLDHSEEIEKTLKVQAQVSEVKNIMLEN 174 Query: 389 YEQL 400 E++ Sbjct: 175 IEKV 178 >07_01_0389 - 2915191-2915604,2915696-2915752,2915867-2915922, 2916053-2916113,2916243-2916365,2916505-2916537, 2916617-2916709,2916839-2916934,2917025-2917203, 2917344-2917530,2918051-2918184,2918311-2918518, 2918598-2918633,2918785-2919241,2919633-2919736, 2920489-2920569,2920646-2920697,2920837-2920876, 2920991-2921085,2921241-2921383,2921899-2922006, 2922120-2922221,2922302-2922348,2922425-2922554, 2923173-2923304,2923404-2923616,2923709-2923963, 2924053-2924799 Length = 1460 Score = 29.5 bits (63), Expect = 3.4 Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 2/76 (2%) Frame = +2 Query: 206 LYARRFATGGRTRENPIERNKELETALRQHQNVIEDQAQEIEYLTK--QTVALREVNDSR 379 ++A GGR + ++ LET QH ++I + ++ TK QT+ R Sbjct: 1268 MHAMAVKHGGRFVDTFLKAFNFLETHFGQHNDIILQMIKSLQKATKTIQTICAEAKGHKR 1327 Query: 380 LRIYEQLELSIQDLER 427 I ++ ++ + LER Sbjct: 1328 TMITSKIPVAKRSLER 1343 >03_01_0423 + 3240224-3240394,3241464-3241628,3242322-3242339, 3242494-3242836,3244138-3248540,3248928-3249107, 3249108-3250892,3251055-3252173 Length = 2727 Score = 29.5 bits (63), Expect = 3.4 Identities = 27/95 (28%), Positives = 43/95 (45%), Gaps = 3/95 (3%) Frame = +2 Query: 257 ERNKELETALRQHQNVIEDQAQEIEYLTKQTVALRE---VNDSRLRIYEQLELSIQDLER 427 ERN+EL LR + +ED L K+ L E V D+ R+ L Sbjct: 2159 ERNQELCRVLRDLEVAVEDAEGVKVDLEKKITTLTERGAVQDNETRL----------LRE 2208 Query: 428 ANHRLAVDHAADKKHIKSLCSNIDTVEPNAKNYKR 532 AN+ L V+ ++ +SL S +T+ A+ ++R Sbjct: 2209 ANNTLQVEVGIHEQKEESLMSTFETMRKEAEQHER 2243 >08_02_1453 - 27199228-27200579,27200712-27202646,27202905-27202966, 27203525-27203545,27204305-27204344,27204345-27204792, 27204866-27204964,27205071-27205394,27205446-27205574, 27205657-27205875,27205976-27206194,27206436-27206669, 27206773-27206943,27207466-27207577,27207955-27208010, 27208083-27208181,27208901-27209134,27209258-27209311, 27209363-27209422 Length = 1955 Score = 28.7 bits (61), Expect = 5.9 Identities = 18/67 (26%), Positives = 31/67 (46%) Frame = +2 Query: 257 ERNKELETALRQHQNVIEDQAQEIEYLTKQTVALREVNDSRLRIYEQLELSIQDLERANH 436 E+ KEL T R+ N ++AQ ++ + LRE L + EQ + ++ + Sbjct: 159 EQTKELATFRRERDNSEAERAQHLKQIHDLQEHLREKESQMLALEEQHRAAQDNIIYKDE 218 Query: 437 RLAVDHA 457 +L HA Sbjct: 219 QLREAHA 225 >04_04_1650 - 35051728-35051823,35052054-35052162,35052270-35052416, 35052516-35052637,35052726-35052825,35052895-35053095, 35053202-35053407,35053778-35053803,35054239-35054327, 35054427-35054635,35055577-35055672,35055754-35055924 Length = 523 Score = 28.7 bits (61), Expect = 5.9 Identities = 15/44 (34%), Positives = 20/44 (45%) Frame = +2 Query: 311 DQAQEIEYLTKQTVALREVNDSRLRIYEQLELSIQDLERANHRL 442 D+ +EY + R ND R+ E L +I LE HRL Sbjct: 111 DKLTSVEYFFTSKIRCRVGNDVHERVNELLSKAIHGLENEFHRL 154 >08_01_0655 + 5646567-5646650,5646675-5647697,5648227-5648382, 5648499-5648529,5648636-5648808 Length = 488 Score = 28.3 bits (60), Expect = 7.8 Identities = 15/52 (28%), Positives = 26/52 (50%) Frame = +3 Query: 150 KKKFGGNEELEQDDLTSRRCMLDDLQLAAELGKTLSNATRNSRQPFASIKML 305 KKKF G + L D++ L+L A+ G+ + N + F+++K L Sbjct: 337 KKKFNGGKVLGGDNVLHSLSNARSLELLADAGEVILNRELKTCPTFSNLKTL 388 >07_01_0020 - 127855-129156,129240-129365,129811-129865,130047-130177 Length = 537 Score = 28.3 bits (60), Expect = 7.8 Identities = 16/88 (18%), Positives = 37/88 (42%) Frame = +2 Query: 143 SGEEEIRWKRRAGARRSHLTSLYARRFATGGRTRENPIERNKELETALRQHQNVIEDQAQ 322 + EE++ +R + A + E + + +E A + +E+ Sbjct: 183 AAREELKLERHHRRELEGANGKLVKEVARARQRVETERKARELMEEACEELSKEVEEDQA 242 Query: 323 EIEYLTKQTVALREVNDSRLRIYEQLEL 406 E+E L ++ V++RE + R+ + E+ Sbjct: 243 EVEALRRECVSMREEMEEERRMLQMAEV 270 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 19,939,142 Number of Sequences: 37544 Number of extensions: 383278 Number of successful extensions: 1024 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 999 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1023 length of database: 14,793,348 effective HSP length: 81 effective length of database: 11,752,284 effective search space used: 2268190812 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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