Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30772
(825 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0829 - 20871810-20872011,20873226-20873359,20873480-208773... 31 1.1
02_01_0642 - 4803464-4805665,4806231-4806320 30 1.9
03_02_0507 - 8999902-9000649,9001106-9001225,9001314-9001394,900... 30 2.6
07_01_0987 + 8320205-8320472,8321549-8321690,8321773-8321893,832... 29 3.4
07_01_0389 - 2915191-2915604,2915696-2915752,2915867-2915922,291... 29 3.4
03_01_0423 + 3240224-3240394,3241464-3241628,3242322-3242339,324... 29 3.4
08_02_1453 - 27199228-27200579,27200712-27202646,27202905-272029... 29 5.9
04_04_1650 - 35051728-35051823,35052054-35052162,35052270-350524... 29 5.9
08_01_0655 + 5646567-5646650,5646675-5647697,5648227-5648382,564... 28 7.8
07_01_0020 - 127855-129156,129240-129365,129811-129865,130047-13... 28 7.8
>10_08_0829 - 20871810-20872011,20873226-20873359,20873480-20877313,
20878057-20878177,20878414-20878451,20879096-20879218,
20879308-20879505,20880270-20880356
Length = 1578
Score = 31.1 bits (67), Expect = 1.1
Identities = 24/107 (22%), Positives = 48/107 (44%), Gaps = 1/107 (0%)
Frame = +2
Query: 212 ARRFATGGRTRENPIERNK-ELETALRQHQNVIEDQAQEIEYLTKQTVALREVNDSRLRI 388
+R T + +E K EL+ + + +++I + E+E + Q V L+E R
Sbjct: 843 SRSLITNLKDELEQVEAQKVELKLQMDESRSLITNLKDELEQVEAQKVELKENQLESHRR 902
Query: 389 YEQLELSIQDLERANHRLAVDHAADKKHIKSLCSNIDTVEPNAKNYK 529
+++ + L R+N +L A H+ C ++ T+ + K K
Sbjct: 903 LSEVQEDSEALRRSNAKL----QATVDHVVEECKSLQTLTADLKKQK 945
>02_01_0642 - 4803464-4805665,4806231-4806320
Length = 763
Score = 30.3 bits (65), Expect = 1.9
Identities = 19/89 (21%), Positives = 42/89 (47%)
Frame = +2
Query: 269 ELETALRQHQNVIEDQAQEIEYLTKQTVALREVNDSRLRIYEQLELSIQDLERANHRLAV 448
E A Q + I++ EI+ ++ + N+ R ++L+++ Q+LER N
Sbjct: 240 EANQAAEQQEATIKELRSEIK---RKEIDFSRSNELRKANEQKLKIAEQELERQNMGWLA 296
Query: 449 DHAADKKHIKSLCSNIDTVEPNAKNYKRL 535
K+ + C ++D ++ ++KR+
Sbjct: 297 AQKELKEVAQLACKDMDGIKDTVSDFKRV 325
>03_02_0507 -
8999902-9000649,9001106-9001225,9001314-9001394,
9001591-9001613
Length = 323
Score = 29.9 bits (64), Expect = 2.6
Identities = 22/102 (21%), Positives = 45/102 (44%)
Frame = +2
Query: 122 NNVRSNGSGEEEIRWKRRAGARRSHLTSLYARRFATGGRTRENPIERNKELETALRQHQN 301
NN+ S SG EE R +R H S +R N +KE + ++ +
Sbjct: 176 NNIDSGSSGSEESGKHRSHSEKRKHKKSRKHKRRYDDSSDESNSESDDKESKRRRKEEKR 235
Query: 302 VIEDQAQEIEYLTKQTVALREVNDSRLRIYEQLELSIQDLER 427
+ +++ + + A R+ + +L+ E ++++ DLE+
Sbjct: 236 LRKEERRRRREERHRRKADRQASKLKLKHAETVDMA-SDLEK 276
>07_01_0987 +
8320205-8320472,8321549-8321690,8321773-8321893,
8322190-8322264,8322784-8322846,8322934-8323086
Length = 273
Score = 29.5 bits (63), Expect = 3.4
Identities = 16/64 (25%), Positives = 28/64 (43%)
Frame = +2
Query: 209 YARRFATGGRTRENPIERNKELETALRQHQNVIEDQAQEIEYLTKQTVALREVNDSRLRI 388
+ +R+ G NKE ++QH + D ++EIE K + EV + L
Sbjct: 115 FMKRYGGGKADTALAKSLNKEYGPVIKQHMQYVLDHSEEIEKTLKVQAQVSEVKNIMLEN 174
Query: 389 YEQL 400
E++
Sbjct: 175 IEKV 178
>07_01_0389 - 2915191-2915604,2915696-2915752,2915867-2915922,
2916053-2916113,2916243-2916365,2916505-2916537,
2916617-2916709,2916839-2916934,2917025-2917203,
2917344-2917530,2918051-2918184,2918311-2918518,
2918598-2918633,2918785-2919241,2919633-2919736,
2920489-2920569,2920646-2920697,2920837-2920876,
2920991-2921085,2921241-2921383,2921899-2922006,
2922120-2922221,2922302-2922348,2922425-2922554,
2923173-2923304,2923404-2923616,2923709-2923963,
2924053-2924799
Length = 1460
Score = 29.5 bits (63), Expect = 3.4
Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Frame = +2
Query: 206 LYARRFATGGRTRENPIERNKELETALRQHQNVIEDQAQEIEYLTK--QTVALREVNDSR 379
++A GGR + ++ LET QH ++I + ++ TK QT+ R
Sbjct: 1268 MHAMAVKHGGRFVDTFLKAFNFLETHFGQHNDIILQMIKSLQKATKTIQTICAEAKGHKR 1327
Query: 380 LRIYEQLELSIQDLER 427
I ++ ++ + LER
Sbjct: 1328 TMITSKIPVAKRSLER 1343
>03_01_0423 + 3240224-3240394,3241464-3241628,3242322-3242339,
3242494-3242836,3244138-3248540,3248928-3249107,
3249108-3250892,3251055-3252173
Length = 2727
Score = 29.5 bits (63), Expect = 3.4
Identities = 27/95 (28%), Positives = 43/95 (45%), Gaps = 3/95 (3%)
Frame = +2
Query: 257 ERNKELETALRQHQNVIEDQAQEIEYLTKQTVALRE---VNDSRLRIYEQLELSIQDLER 427
ERN+EL LR + +ED L K+ L E V D+ R+ L
Sbjct: 2159 ERNQELCRVLRDLEVAVEDAEGVKVDLEKKITTLTERGAVQDNETRL----------LRE 2208
Query: 428 ANHRLAVDHAADKKHIKSLCSNIDTVEPNAKNYKR 532
AN+ L V+ ++ +SL S +T+ A+ ++R
Sbjct: 2209 ANNTLQVEVGIHEQKEESLMSTFETMRKEAEQHER 2243
>08_02_1453 -
27199228-27200579,27200712-27202646,27202905-27202966,
27203525-27203545,27204305-27204344,27204345-27204792,
27204866-27204964,27205071-27205394,27205446-27205574,
27205657-27205875,27205976-27206194,27206436-27206669,
27206773-27206943,27207466-27207577,27207955-27208010,
27208083-27208181,27208901-27209134,27209258-27209311,
27209363-27209422
Length = 1955
Score = 28.7 bits (61), Expect = 5.9
Identities = 18/67 (26%), Positives = 31/67 (46%)
Frame = +2
Query: 257 ERNKELETALRQHQNVIEDQAQEIEYLTKQTVALREVNDSRLRIYEQLELSIQDLERANH 436
E+ KEL T R+ N ++AQ ++ + LRE L + EQ + ++ +
Sbjct: 159 EQTKELATFRRERDNSEAERAQHLKQIHDLQEHLREKESQMLALEEQHRAAQDNIIYKDE 218
Query: 437 RLAVDHA 457
+L HA
Sbjct: 219 QLREAHA 225
>04_04_1650 -
35051728-35051823,35052054-35052162,35052270-35052416,
35052516-35052637,35052726-35052825,35052895-35053095,
35053202-35053407,35053778-35053803,35054239-35054327,
35054427-35054635,35055577-35055672,35055754-35055924
Length = 523
Score = 28.7 bits (61), Expect = 5.9
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = +2
Query: 311 DQAQEIEYLTKQTVALREVNDSRLRIYEQLELSIQDLERANHRL 442
D+ +EY + R ND R+ E L +I LE HRL
Sbjct: 111 DKLTSVEYFFTSKIRCRVGNDVHERVNELLSKAIHGLENEFHRL 154
>08_01_0655 +
5646567-5646650,5646675-5647697,5648227-5648382,
5648499-5648529,5648636-5648808
Length = 488
Score = 28.3 bits (60), Expect = 7.8
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +3
Query: 150 KKKFGGNEELEQDDLTSRRCMLDDLQLAAELGKTLSNATRNSRQPFASIKML 305
KKKF G + L D++ L+L A+ G+ + N + F+++K L
Sbjct: 337 KKKFNGGKVLGGDNVLHSLSNARSLELLADAGEVILNRELKTCPTFSNLKTL 388
>07_01_0020 -
127855-129156,129240-129365,129811-129865,130047-130177
Length = 537
Score = 28.3 bits (60), Expect = 7.8
Identities = 16/88 (18%), Positives = 37/88 (42%)
Frame = +2
Query: 143 SGEEEIRWKRRAGARRSHLTSLYARRFATGGRTRENPIERNKELETALRQHQNVIEDQAQ 322
+ EE++ +R + A + E + + +E A + +E+
Sbjct: 183 AAREELKLERHHRRELEGANGKLVKEVARARQRVETERKARELMEEACEELSKEVEEDQA 242
Query: 323 EIEYLTKQTVALREVNDSRLRIYEQLEL 406
E+E L ++ V++RE + R+ + E+
Sbjct: 243 EVEALRRECVSMREEMEEERRMLQMAEV 270
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,939,142
Number of Sequences: 37544
Number of extensions: 383278
Number of successful extensions: 1024
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 999
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1023
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2268190812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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