Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30772
(825 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_10419| Best HMM Match : No HMM Matches (HMM E-Value=.) 69 5e-12
SB_2140| Best HMM Match : DUF1154 (HMM E-Value=1) 39 0.006
SB_50756| Best HMM Match : S-antigen (HMM E-Value=2.4e-09) 35 0.070
SB_56522| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.6e-30) 33 0.21
SB_30628| Best HMM Match : Alpha-2-MRAP_N (HMM E-Value=1.2) 32 0.49
SB_4107| Best HMM Match : M (HMM E-Value=8e-22) 32 0.49
SB_58447| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.49
SB_53736| Best HMM Match : Borrelia_orfA (HMM E-Value=0.64) 31 0.86
SB_21610| Best HMM Match : HSF_DNA-bind (HMM E-Value=0.32) 31 0.86
SB_36254| Best HMM Match : Filament (HMM E-Value=0.21) 31 1.1
SB_29857| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_53466| Best HMM Match : SCP (HMM E-Value=2.4e-27) 31 1.1
SB_27572| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.1e-19) 31 1.1
SB_36880| Best HMM Match : DUF1337 (HMM E-Value=0.54) 31 1.5
SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20) 30 2.0
SB_13548| Best HMM Match : SpoVS (HMM E-Value=7) 30 2.6
SB_22161| Best HMM Match : Vicilin_N (HMM E-Value=0.11) 29 3.5
SB_11711| Best HMM Match : 7tm_1 (HMM E-Value=8.5e-10) 29 3.5
SB_9610| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_32763| Best HMM Match : Histone_HNS (HMM E-Value=0.15) 29 3.5
SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 29 3.5
SB_22540| Best HMM Match : Glyco_transf_54 (HMM E-Value=0) 29 4.6
SB_24046| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.1
SB_22720| Best HMM Match : KID (HMM E-Value=0.0014) 29 6.1
SB_9049| Best HMM Match : SMC_C (HMM E-Value=0.0098) 29 6.1
SB_23900| Best HMM Match : Fip1 (HMM E-Value=6.3) 29 6.1
SB_39939| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.0
SB_26831| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.0
>SB_10419| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 848
Score = 68.9 bits (161), Expect = 5e-12
Identities = 32/75 (42%), Positives = 53/75 (70%)
Frame = +2
Query: 245 ENPIERNKELETALRQHQNVIEDQAQEIEYLTKQTVALREVNDSRLRIYEQLELSIQDLE 424
+N +ERNKELE L+ E+QA + E+L+KQ LREVN++RL+ +EQ+E++ +L+
Sbjct: 301 KNLLERNKELEILLKSSHQFSEEQALKNEFLSKQLETLREVNENRLKAFEQMEMTAMELQ 360
Query: 425 RANHRLAVDHAADKK 469
+AN +L + ++ KK
Sbjct: 361 KANMKLQNETSSMKK 375
>SB_2140| Best HMM Match : DUF1154 (HMM E-Value=1)
Length = 155
Score = 38.7 bits (86), Expect = 0.006
Identities = 23/82 (28%), Positives = 43/82 (52%), Gaps = 4/82 (4%)
Frame = +2
Query: 131 RSNGSGEEEIRWKRRAGARRSHLTSLYARRFATGGRTRENPIERNKELETALRQHQ---- 298
R + E + +W+RR + H + A G + +E E+NKEL+ ++HQ
Sbjct: 57 RETVASEMDYKWQRRENELK-HEHKMSTEE-ALGQQRKELIHEKNKELDGLNKEHQRQIE 114
Query: 299 NVIEDQAQEIEYLTKQTVALRE 364
++E +EI+ +TK+ +L+E
Sbjct: 115 TIVEQHGKEIDVMTKENASLKE 136
>SB_50756| Best HMM Match : S-antigen (HMM E-Value=2.4e-09)
Length = 712
Score = 35.1 bits (77), Expect = 0.070
Identities = 21/73 (28%), Positives = 41/73 (56%)
Frame = +2
Query: 266 KELETALRQHQNVIEDQAQEIEYLTKQTVALREVNDSRLRIYEQLELSIQDLERANHRLA 445
K + ++Q ++ + A++I+ L + L++ N+S R E +DLER+N R+A
Sbjct: 621 KHAKMVIQQLKDQELEMAKQIDELEQHIETLKQQNNSLQRNNSSFEGEKRDLERSNVRIA 680
Query: 446 VDHAADKKHIKSL 484
D +A K+ ++ L
Sbjct: 681 KDVSALKRTLERL 693
>SB_56522| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.6e-30)
Length = 3071
Score = 33.5 bits (73), Expect = 0.21
Identities = 23/88 (26%), Positives = 39/88 (44%)
Frame = +2
Query: 269 ELETALRQHQNVIEDQAQEIEYLTKQTVALREVNDSRLRIYEQLELSIQDLERANHRLAV 448
E+ +A+ + V+ED+ +IE+ L E + + + L DL+ ANH L +
Sbjct: 1758 EIRSAIEGLERVLEDKDSQIEWYRNSNKTLEEDIAALRKKFGNLRAEHDDLQHANHGLIL 1817
Query: 449 DHAADKKHIKSLCSNIDTVEPNAKNYKR 532
+ L ++T E N KN R
Sbjct: 1818 QGQELESKAADLEHRLET-EANDKNKLR 1844
>SB_30628| Best HMM Match : Alpha-2-MRAP_N (HMM E-Value=1.2)
Length = 172
Score = 32.3 bits (70), Expect = 0.49
Identities = 20/54 (37%), Positives = 32/54 (59%)
Frame = +2
Query: 266 KELETALRQHQNVIEDQAQEIEYLTKQTVALREVNDSRLRIYEQLELSIQDLER 427
K LE+ALR+ ++ Q +EIE+L K+ LR D +R YE + +D+E+
Sbjct: 103 KLLESALRERNKQMDIQRREIEFLRKE---LRR-KDEVIREYENIIKEREDMEK 152
>SB_4107| Best HMM Match : M (HMM E-Value=8e-22)
Length = 2039
Score = 32.3 bits (70), Expect = 0.49
Identities = 21/83 (25%), Positives = 36/83 (43%)
Frame = +2
Query: 260 RNKELETALRQHQNVIEDQAQEIEYLTKQTVALREVNDSRLRIYEQLELSIQDLERANHR 439
R ELE +RQ Q ++ Q + E L + L+E + + S+ E+
Sbjct: 1733 RRMELEGQIRQLQQILRQQKEAEEELVARIGKLQEEKRELQERLAKFQRSVAAAEQEKRE 1792
Query: 440 LAVDHAADKKHIKSLCSNIDTVE 508
L H +K K+L + +D +E
Sbjct: 1793 LERAHVRLEKDKKALRNTLDKIE 1815
>SB_58447| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 731
Score = 32.3 bits (70), Expect = 0.49
Identities = 17/54 (31%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Frame = +2
Query: 269 ELETALRQHQNVIEDQAQEIEYLTKQTVALREVNDSRLRIYEQLELSIQ-DLER 427
E+E L++ +ED EI T +T +LRE ++R ++ ++L ++ DLE+
Sbjct: 163 EIEKQLKEVNKSVEDLKIEIAQRTVETKSLREELENRQKLVDELHKEVEGDLEK 216
>SB_53736| Best HMM Match : Borrelia_orfA (HMM E-Value=0.64)
Length = 520
Score = 31.5 bits (68), Expect = 0.86
Identities = 20/81 (24%), Positives = 43/81 (53%)
Frame = +2
Query: 281 ALRQHQNVIEDQAQEIEYLTKQTVALREVNDSRLRIYEQLELSIQDLERANHRLAVDHAA 460
A+ QH+ V+E Q ++ E ++ AL+ + +++ + ++ +D A HRL V+H
Sbjct: 135 AMAQHR-VMEKQEEKDELDNRKMKALKNLEANQM--ISEGTMTAEDFLEAYHRLVVEHQL 191
Query: 461 DKKHIKSLCSNIDTVEPNAKN 523
K+ + C + + E ++ N
Sbjct: 192 AKEEQEDRCDDEEFQEIDSLN 212
>SB_21610| Best HMM Match : HSF_DNA-bind (HMM E-Value=0.32)
Length = 425
Score = 31.5 bits (68), Expect = 0.86
Identities = 22/93 (23%), Positives = 40/93 (43%), Gaps = 2/93 (2%)
Frame = +2
Query: 155 EIRWKRRAGAR--RSHLTSLYARRFATGGRTRENPIERNKELETALRQHQNVIEDQAQEI 328
E W +++ + + + R G NP ++ +ELE ++ H+ E QE
Sbjct: 210 ENEWLKKSNESICKERIVQVAQLRTELGSIPDTNPEKKIQELENTIKHHEEKTEVSDQEK 269
Query: 329 EYLTKQTVALREVNDSRLRIYEQLELSIQDLER 427
E L ++ L E R ++LE + L+R
Sbjct: 270 EKLRERIALLEEAISHRQDKIQRLEENGSTLDR 302
>SB_36254| Best HMM Match : Filament (HMM E-Value=0.21)
Length = 589
Score = 31.1 bits (67), Expect = 1.1
Identities = 31/126 (24%), Positives = 50/126 (39%), Gaps = 6/126 (4%)
Frame = +2
Query: 149 EEEIRWKRRAGARRSHLTSLYARRFAT-----GGRTRENPIERN-KELETALRQHQNVIE 310
EE+IR + + A L L A R + G R + E LET LR+ Q
Sbjct: 7 EEKIRLHKASEANEKRLLELEAERELSLEENSGKRKLADSNEAKIASLETTLRRTQEHEN 66
Query: 311 DQAQEIEYLTKQTVALREVNDSRLRIYEQLELSIQDLERANHRLAVDHAADKKHIKSLCS 490
QE+ K+ AL S + L+ + Q E +L D+ +K + +
Sbjct: 67 QVRQELYNTHKRLTALEHEQASNKERQKSLQDAYQSAEEKALKLKEDYMISQKKLSETEA 126
Query: 491 NIDTVE 508
N++ +
Sbjct: 127 NLENAQ 132
>SB_29857| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1264
Score = 31.1 bits (67), Expect = 1.1
Identities = 19/70 (27%), Positives = 34/70 (48%)
Frame = +2
Query: 275 ETALRQHQNVIEDQAQEIEYLTKQTVALREVNDSRLRIYEQLELSIQDLERANHRLAVDH 454
+++ R+ Q A+E + AL E N + + + LE ++ R N+RL+VDH
Sbjct: 1064 QSSAREMQRQAAKSAEEAGKYKVELSALGEDNTTLRQRIQTLESELKRYRRENNRLSVDH 1123
Query: 455 AADKKHIKSL 484
+ +K L
Sbjct: 1124 TNLQMSLKKL 1133
>SB_53466| Best HMM Match : SCP (HMM E-Value=2.4e-27)
Length = 5087
Score = 31.1 bits (67), Expect = 1.1
Identities = 19/70 (27%), Positives = 32/70 (45%)
Frame = +2
Query: 257 ERNKELETALRQHQNVIEDQAQEIEYLTKQTVALREVNDSRLRIYEQLELSIQDLERANH 436
E +E E + +H+ V+E + E E VAL E S L I E++E ++ +
Sbjct: 1587 EIEQETEETVEEHEEVVESEEVEEEEAPAVVVALSE-EASALGISEEIEKETEETVEQHE 1645
Query: 437 RLAVDHAADK 466
+ A +K
Sbjct: 1646 EVVESEAGEK 1655
>SB_27572| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.1e-19)
Length = 3107
Score = 31.1 bits (67), Expect = 1.1
Identities = 27/104 (25%), Positives = 48/104 (46%), Gaps = 3/104 (2%)
Frame = +2
Query: 149 EEEIRWKRRAGARRSHLTSLYARRFATGGRTRENPIERNKELETALRQHQNVIEDQAQEI 328
E++ + + R H + ++R A +E KE++ +LR+ Q D
Sbjct: 1379 EDDHKKIHQQNIERDHENKMLSKRVADLTALKEKFEHEKKEMKQSLREAQGRESDLEVRY 1438
Query: 329 EYLTKQTVAL-REVNDSRLRIYEQLE--LSIQDLERANHRLAVD 451
EY K+ VAL ++++D+ R E L ++ L RLA+D
Sbjct: 1439 EYEVKEKVALQQQLDDTTNRSNADREKFLKLEQL-LIEERLAMD 1481
Score = 31.1 bits (67), Expect = 1.1
Identities = 31/126 (24%), Positives = 50/126 (39%), Gaps = 6/126 (4%)
Frame = +2
Query: 149 EEEIRWKRRAGARRSHLTSLYARRFAT-----GGRTRENPIERN-KELETALRQHQNVIE 310
EE+IR + + A L L A R + G R + E LET LR+ Q
Sbjct: 2535 EEKIRLHKASEANEKRLLELEAERELSLEENSGKRKLADSNEAKIASLETTLRRTQEHEN 2594
Query: 311 DQAQEIEYLTKQTVALREVNDSRLRIYEQLELSIQDLERANHRLAVDHAADKKHIKSLCS 490
QE+ K+ AL S + L+ + Q E +L D+ +K + +
Sbjct: 2595 QVRQELYNTHKRLTALEHEQASNKERQKSLQDAYQSAEEKALKLKEDYMISQKKLSETEA 2654
Query: 491 NIDTVE 508
N++ +
Sbjct: 2655 NLENAQ 2660
>SB_36880| Best HMM Match : DUF1337 (HMM E-Value=0.54)
Length = 367
Score = 30.7 bits (66), Expect = 1.5
Identities = 17/89 (19%), Positives = 46/89 (51%), Gaps = 5/89 (5%)
Frame = +2
Query: 233 GRTRENPIERNKELETALRQHQNVIEDQAQEI-----EYLTKQTVALREVNDSRLRIYEQ 397
G+ ++ P E+ +EL RQ +++++Q+ EY++ + ++ + + + ++
Sbjct: 101 GKKKDEPTEKEEELRKE-RQENEWLQEESQQTRLESHEYMSYMSKKTQKRQTTIISLSDR 159
Query: 398 LELSIQDLERANHRLAVDHAADKKHIKSL 484
+ +QD+ +L +D+ K+ +K L
Sbjct: 160 NQKELQDITDQKEQLLLDYDQKKEALKQL 188
>SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20)
Length = 3489
Score = 30.3 bits (65), Expect = 2.0
Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Frame = +2
Query: 284 LRQHQNVIEDQAQEIEYLTKQT--VALREVNDSRLRIYEQLELSIQDLERANHRLAVDHA 457
LR N + QA E + +Q+ + E+N R Y+++E DLE A++ A +HA
Sbjct: 217 LRDELNQLMVQADEAKNQMRQSHMAEIEEMNRKMAREYQKIESLRADLEGAHNSSAQEHA 276
Query: 458 ADKKHIK 478
+ ++
Sbjct: 277 HQLQELR 283
>SB_13548| Best HMM Match : SpoVS (HMM E-Value=7)
Length = 497
Score = 29.9 bits (64), Expect = 2.6
Identities = 20/57 (35%), Positives = 27/57 (47%)
Frame = +2
Query: 188 RSHLTSLYARRFATGGRTRENPIERNKELETALRQHQNVIEDQAQEIEYLTKQTVAL 358
R + Y + AT G T+E+ E K+LE L NVI D +Y TK V +
Sbjct: 325 RGKILERYDKMLATTGCTKEDLFEMEKKLEVKLVALGNVIWDSG---KYKTKARVTI 378
>SB_22161| Best HMM Match : Vicilin_N (HMM E-Value=0.11)
Length = 489
Score = 29.5 bits (63), Expect = 3.5
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Frame = +2
Query: 260 RNKELETALRQ--HQNVIEDQAQEIEYLTKQTVALREVNDSRLRIYEQLELSIQDLERAN 433
R+K T + + Q IE+ + L +Q AL++ R EQL+L +D++
Sbjct: 167 RHKNFSTLIGKLLFQPKIEEISGNARQLNRQITALQQEGQQLNRNREQLKLQARDIQSRL 226
Query: 434 HRL 442
HRL
Sbjct: 227 HRL 229
>SB_11711| Best HMM Match : 7tm_1 (HMM E-Value=8.5e-10)
Length = 948
Score = 29.5 bits (63), Expect = 3.5
Identities = 19/80 (23%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Frame = +2
Query: 341 KQTVALREVNDSRLRIYEQLELSIQDLERANHRLAVDHAADKKHIKSLCSNID-TVEPNA 517
K +A+R N SR L ++ + N R + + +H+K +C N+ V P+
Sbjct: 779 KVFLAVRPSNKSREYAERSFWLFVRPTSQENMRECLSGSPSVQHVKRICGNVCLAVRPSN 838
Query: 518 KNYKRLWTNLTFN*RSTGEE 577
K+ + ++ + R T +E
Sbjct: 839 KSREYAGRSVWLSVRPTSQE 858
>SB_9610| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 193
Score = 29.5 bits (63), Expect = 3.5
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +2
Query: 188 RSHLTSLYARRFATGGRTRENPIERNKELETALRQHQN 301
R ++ Y ++ AT G T+E+ E K+LE + H N
Sbjct: 74 RGNILERYDKKLATTGCTKEDLFEMEKKLEITIPCHNN 111
>SB_32763| Best HMM Match : Histone_HNS (HMM E-Value=0.15)
Length = 481
Score = 29.5 bits (63), Expect = 3.5
Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 5/85 (5%)
Frame = +2
Query: 203 SLYARRFATGGRTREN-PIERNKELETALRQHQNVIEDQAQEIEYL----TKQTVALREV 367
SL A T +TR++ +RN EL +++ ++ EDQA IE + K ++E+
Sbjct: 180 SLQAMMTQTRMKTRQSIRSKRNMELHEEIQRLKHSTEDQASLIENMKSKAAKDQKLIKEL 239
Query: 368 NDSRLRIYEQLELSIQDLERANHRL 442
N R Y++ E D +R L
Sbjct: 240 NFQNEREYKKNEKMKGDTQRMKKEL 264
>SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 7381
Score = 29.5 bits (63), Expect = 3.5
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = -3
Query: 688 ERRYPSSVYYYLGFLAILRWFRISLSLWVFRFRVFVQLFACR 563
ER YP ++ F+A R+ R++ W R + V+LF CR
Sbjct: 2319 ERYYPVVNRFFKPFIA--RYVRVNPKTWHSRIALRVELFGCR 2358
>SB_22540| Best HMM Match : Glyco_transf_54 (HMM E-Value=0)
Length = 352
Score = 29.1 bits (62), Expect = 4.6
Identities = 21/75 (28%), Positives = 31/75 (41%), Gaps = 1/75 (1%)
Frame = +2
Query: 314 QAQEIEYLTKQTVALREVNDSRLRIYEQLELSIQDLERANHRLAVDHAADKKHIKSLCSN 493
Q E YL AL + D + + + + + DL+ +NH + KK K L S
Sbjct: 91 QRSEASYLMDTLQALIDGLDENDKKHVMVVVFVADLDNSNHAAKMSQQLSKKFSKELDSG 150
Query: 494 -IDTVEPNAKNYKRL 535
I V A Y +L
Sbjct: 151 LIQAVTAPASYYPKL 165
>SB_24046| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2848
Score = 28.7 bits (61), Expect = 6.1
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 7/71 (9%)
Frame = +2
Query: 236 RTRENPIERNKELETALRQHQN---VIEDQA----QEIEYLTKQTVALREVNDSRLRIYE 394
R R+ R+KELE R+ + ++E Q QE+EYL ++ V ++ ++
Sbjct: 1459 RRRDEQARRDKELEDQKRKDEERRLIMEQQERERRQEMEYLQREKEERLRVEEALKKLER 1518
Query: 395 QLELSIQDLER 427
+ E Q LER
Sbjct: 1519 EKEEERQRLER 1529
>SB_22720| Best HMM Match : KID (HMM E-Value=0.0014)
Length = 847
Score = 28.7 bits (61), Expect = 6.1
Identities = 26/99 (26%), Positives = 49/99 (49%), Gaps = 3/99 (3%)
Frame = +2
Query: 257 ERNKELETALRQHQNVIEDQAQEIEYLT--KQTVALREVNDSRLRI-YEQLELSIQDLER 427
+R ELE L Q ++ED Q+ E ++ + V RE + L E+LE ++++ ++
Sbjct: 284 DRISELEQLLASSQELLEDIRQKDEKISTLNRIVLEREEKLAELEHGVEELECAVEESQK 343
Query: 428 ANHRLAVDHAADKKHIKSLCSNIDTVEPNAKNYKRLWTN 544
+ A+ DK +K+L +D +E ++L N
Sbjct: 344 LHQ--AIQQKDDK--LKTLEDRLDELEDVCSENEKLSKN 378
>SB_9049| Best HMM Match : SMC_C (HMM E-Value=0.0098)
Length = 661
Score = 28.7 bits (61), Expect = 6.1
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = +2
Query: 296 QNVIEDQAQEIEYLTKQTVALREVNDSRLRIYEQLELSIQDLERANHRL 442
Q IE+ + L +Q AL++ R EQL+L +D++ HRL
Sbjct: 18 QPKIEEISGNARQLNRQITALQQEGQQLNRNREQLKLQARDIQSRLHRL 66
>SB_23900| Best HMM Match : Fip1 (HMM E-Value=6.3)
Length = 109
Score = 28.7 bits (61), Expect = 6.1
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = +2
Query: 257 ERNKELETALRQHQNVIEDQAQEIEYLTKQTVALREVNDSRLRIYEQLELSIQ 415
ERN+ L+ AL + I QE+ ++ + + EV + L+ Y LS Q
Sbjct: 7 ERNRSLKQALIESLAAILSPDQEVRKQAEEHLKVLEVTEETLKTYRNFGLSRQ 59
>SB_39939| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 92
Score = 28.3 bits (60), Expect = 8.0
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +3
Query: 117 Q*TMSEVMDLVKKKFGGNEELEQDD 191
Q T E+ DL KK F GN++ + DD
Sbjct: 14 QNTPPELKDLAKKNFNGNDDDDNDD 38
>SB_26831| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 932
Score = 28.3 bits (60), Expect = 8.0
Identities = 23/88 (26%), Positives = 43/88 (48%)
Frame = +2
Query: 245 ENPIERNKELETALRQHQNVIEDQAQEIEYLTKQTVALREVNDSRLRIYEQLELSIQDLE 424
EN E K +T +++ + +++ ++ + KQ + E + S LEL ++DLE
Sbjct: 755 ENGQEVLKRKDTTIQEISSALKEAENKLSGVEKQ---MAEKSSS----INALELKVEDLE 807
Query: 425 RANHRLAVDHAADKKHIKSLCSNIDTVE 508
+ V A K+ I+S S I+ +E
Sbjct: 808 ASIQEQLVCIKAKKEKIESYVSTIERLE 835
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,936,838
Number of Sequences: 59808
Number of extensions: 431853
Number of successful extensions: 1474
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 1357
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1472
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2311562737
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -