Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30772
         (825 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    24   1.5  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    24   1.5  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    24   2.0  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   2.6  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   4.5  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    22   6.0  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   6.0  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    22   6.0  

>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -3

Query: 337 KIFDFLCLIFNNILMLAKGCLEFLVAFDRVFP 242
           +IF+ +C++   ++    GCL+FLV   + FP
Sbjct: 278 RIFNLICMML--LIGHWSGCLQFLVPMLQGFP 307


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -3

Query: 337 KIFDFLCLIFNNILMLAKGCLEFLVAFDRVFP 242
           +IF+ +C++   ++    GCL+FLV   + FP
Sbjct: 246 RIFNLICMML--LIGHWSGCLQFLVPMLQGFP 275


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +2

Query: 644 KKPEVIVHRRRVAPLPELTKEDEGLLRLSD 733
           ++PE    RR   P P+ T +D+G +  S+
Sbjct: 241 QQPERHYERRATPPQPDRTSKDQGTIGESE 270


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 11/39 (28%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = -3

Query: 607 WVFRFRVFVQLFACRSLVER*VRPQSFVVLRIWL-HSVN 494
           WV+ ++  +       L+++   P+   VL +WL HS N
Sbjct: 629 WVYEWKELIPSHIMAGLLDKFFFPKWLQVLALWLNHSPN 667


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +3

Query: 708 TRVY*GLAIALPRELKWLCTKSRDESLEL 794
           T  Y G    LP+ L    TKS+ E +EL
Sbjct: 369 TSTYSGSPTELPKHLPTSLTKSKMEVMEL 397


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +2

Query: 431 NHRLAVDHAADKKHIKSLCSNID 499
           NH   +   A K ++KSL SN D
Sbjct: 249 NHEKMLREQAKKMNVKSLVSNQD 271


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +1

Query: 241 SGKPYRTQQGTRDSPSPASKCY*RSSTRNRIS 336
           SG+  ++  G    P+PA K   R+   +R+S
Sbjct: 374 SGRSQKSTTGPPPGPTPAQKARMRALNIDRVS 405


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +2

Query: 431 NHRLAVDHAADKKHIKSLCSNID 499
           NH   +   A K ++KSL SN D
Sbjct: 249 NHEKMLREQAKKMNVKSLVSNQD 271


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,040
Number of Sequences: 438
Number of extensions: 3840
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26338809
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)