Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30772
(825 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g15780.1 68417.m02402 synaptobrevin-related family protein si... 34 0.100
At1g05320.1 68414.m00539 myosin-related similar to non-muscle my... 34 0.13
At1g63300.1 68414.m07156 expressed protein similar to Intracellu... 33 0.30
At3g30420.1 68416.m03847 hypothetical protein low similarity to ... 31 0.93
At1g18920.1 68414.m02355 hypothetical protein contains Pfam prof... 30 2.1
At1g62780.1 68414.m07086 expressed protein 29 2.8
At1g74770.1 68414.m08663 expressed protein 29 3.7
At1g12270.1 68414.m01419 stress-inducible protein, putative simi... 29 3.7
At1g04760.1 68414.m00472 synaptobrevin family protein similar to... 29 3.7
At4g14760.1 68417.m02271 M protein repeat-containing protein con... 29 5.0
At2g40630.1 68415.m05011 expressed protein 29 5.0
At5g46090.1 68418.m05667 expressed protein contains Pfam profile... 28 6.5
At3g28790.1 68416.m03593 expressed protein 28 6.5
At2g34230.1 68415.m04188 hypothetical protein contains Pfam prof... 28 6.5
At2g33610.1 68415.m04119 SWIRM domain-containing protein / DNA-b... 28 6.5
At1g52080.1 68414.m05875 actin binding protein family contains P... 28 6.5
At4g18425.1 68417.m02734 expressed protein contains Pfam profile... 28 8.7
At2g32670.1 68415.m03994 synaptobrevin family protein similar to... 28 8.7
At1g11690.1 68414.m01342 hypothetical protein 28 8.7
>At4g15780.1 68417.m02402 synaptobrevin-related family protein
similar to Vesicle-associated membrane protein 722
(AtVAMP722) Synaptobrevin-related protein 1 (SP:P47192)
{Arabidopsis thaliana}
Length = 194
Score = 34.3 bits (75), Expect = 0.100
Identities = 18/58 (31%), Positives = 27/58 (46%)
Frame = +2
Query: 209 YARRFATGGRTRENPIERNKELETALRQHQNVIEDQAQEIEYLTKQTVALREVNDSRL 382
+ +R+ G + NKE +++H N I D A+EIE L K + EV L
Sbjct: 90 FKKRYGGGKASTAIAKSLNKEFGPVMKEHMNYIVDHAEEIEKLIKVKAQVSEVKSIML 147
>At1g05320.1 68414.m00539 myosin-related similar to non-muscle
myosin II heavy chain (GI:19879404) [Loligo pealei];
ESTs gb|AA042402,gb|ATTS1380 come from this gene
Length = 828
Score = 33.9 bits (74), Expect = 0.13
Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Frame = +2
Query: 266 KELETALRQHQNVIED-QAQEIEYLTKQTVALREVNDSRLRIYEQLELSIQDLERANHRL 442
K+L T L+ H+NVIE+ + Q +E EV ++ L++ LE +I++LE+ N L
Sbjct: 429 KDLITKLKSHENVIEEHKRQVLEASGVADTRKVEVEEALLKL-NTLESTIEELEKENGDL 487
Query: 443 A 445
A
Sbjct: 488 A 488
>At1g63300.1 68414.m07156 expressed protein similar to Intracellular
protein transport protein USO1 (Swiss-Prot:P25386)
[Saccharomyces cerevisiae]; similar to Myosin II heavy
chain, non muscle (Swiss-Prot:P08799) [Dictyostelium
discoideum]
Length = 1029
Score = 32.7 bits (71), Expect = 0.30
Identities = 20/64 (31%), Positives = 34/64 (53%)
Frame = +2
Query: 236 RTRENPIERNKELETALRQHQNVIEDQAQEIEYLTKQTVALREVNDSRLRIYEQLELSIQ 415
R EN E++ E++ R ++V + QEI+ L ++ L++ DS + EQ E
Sbjct: 700 RMLENLDEKSNEIDNQKRHEEDVTANLNQEIKILKEEIENLKKNQDSLMLQAEQAENLRV 759
Query: 416 DLER 427
DLE+
Sbjct: 760 DLEK 763
>At3g30420.1 68416.m03847 hypothetical protein low similarity to
SP|Q9UUA2 DNA repair and recombination protein pif1,
mitochondrial precursor {Schizosaccharomyces pombe}
Length = 837
Score = 31.1 bits (67), Expect = 0.93
Identities = 21/56 (37%), Positives = 31/56 (55%)
Frame = +2
Query: 269 ELETALRQHQNVIEDQAQEIEYLTKQTVALREVNDSRLRIYEQLELSIQDLERANH 436
E+ET LRQH+ + D E + L EVN+S LR ++ +++I D ER H
Sbjct: 293 EIETLLRQHEKSLSDYP---EMPQPEKSILEEVNNSLLR--QEFQINI-DKERETH 342
>At1g18920.1 68414.m02355 hypothetical protein contains Pfam profile
PF03794: Domain of Unknown function
Length = 980
Score = 29.9 bits (64), Expect = 2.1
Identities = 20/78 (25%), Positives = 40/78 (51%), Gaps = 8/78 (10%)
Frame = +2
Query: 311 DQAQEIEYLTKQTVALREVNDSRLRI-------YEQLELSIQDLERANHRLAVDHA-ADK 466
D E+E+L K + L E+ + + + YE+L +S+QD+ ++ H+L +H ++
Sbjct: 688 DHELEVEHLNKVSFLLNELAELNMLVLDHKNVKYEKLCMSLQDICKSIHKLLSEHLHREE 747
Query: 467 KHIKSLCSNIDTVEPNAK 520
+ L + T+E K
Sbjct: 748 TELWCLFRDCFTIEEQEK 765
>At1g62780.1 68414.m07086 expressed protein
Length = 237
Score = 29.5 bits (63), Expect = 2.8
Identities = 31/99 (31%), Positives = 39/99 (39%), Gaps = 5/99 (5%)
Frame = +2
Query: 182 ARRSHLTSL-YARRFATGGRTRE---NPIERNKELETALRQHQNVIEDQAQEIEYLTKQT 349
A+ H+ L + RR RE + KE ALRQ + V + A+ IEY
Sbjct: 41 AQTGHIARLEFKRRLERDSEAREAFQKQLREEKERRQALRQSRVVPDTAAELIEYFLDTE 100
Query: 350 VALREVNDSRLRIYEQLELSIQ-DLERANHRLAVDHAAD 463
E +RLR E Q LE R AV AD
Sbjct: 101 AQEIEYEIARLRGRLNDEFFAQIRLEIGQIRFAVTKTAD 139
>At1g74770.1 68414.m08663 expressed protein
Length = 985
Score = 29.1 bits (62), Expect = 3.7
Identities = 21/85 (24%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Frame = +2
Query: 269 ELETALRQHQNVIEDQAQEIEYLTKQTVALREVNDSRLRIYEQLELSIQDLERANHRLAV 448
ELET + I ++ E+ L T+ + R YE+L LS++++ ++ H+L
Sbjct: 695 ELETKHFDKVSFILNEMSELNMLVS-TINTTAADHDRKMKYERLCLSLREICKSMHKLLS 753
Query: 449 DHAA-DKKHIKSLCSNIDTVEPNAK 520
+H ++ + L N ++E K
Sbjct: 754 EHIQHEETELWGLFRNCFSIEEQEK 778
>At1g12270.1 68414.m01419 stress-inducible protein, putative similar
to sti (stress inducible protein) [Glycine max]
GI:872116; contains Pfam profile PF00515 TPR Domain
Length = 572
Score = 29.1 bits (62), Expect = 3.7
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +2
Query: 248 NPIERNKELETALRQHQNVIEDQAQEIEYLTKQTVALREV 367
N + K+ ETA++ + IE ++I YLT + E+
Sbjct: 252 NAAYKKKDFETAIQHYSTAIEIDDEDISYLTNRAAVYLEM 291
>At1g04760.1 68414.m00472 synaptobrevin family protein similar to
Vesicle-associated membrane protein 722 (AtVAMP722)
Synaptobrevin-related protein 1 (SP:P47192) {Arabidopsis
thaliana}
Length = 220
Score = 29.1 bits (62), Expect = 3.7
Identities = 15/64 (23%), Positives = 28/64 (43%)
Frame = +2
Query: 209 YARRFATGGRTRENPIERNKELETALRQHQNVIEDQAQEIEYLTKQTVALREVNDSRLRI 388
+ +R+ G + NKE + L++H D +EI L+K + EV +
Sbjct: 89 FNKRYGGGKASTAKANSLNKEFGSKLKEHMQYCADHPEEISKLSKVKAQVTEVKGVMMEN 148
Query: 389 YEQL 400
E++
Sbjct: 149 IEKV 152
>At4g14760.1 68417.m02271 M protein repeat-containing protein
contains Pfam profile: PF02370 M protein repeat
Length = 1676
Score = 28.7 bits (61), Expect = 5.0
Identities = 23/77 (29%), Positives = 38/77 (49%)
Frame = +2
Query: 266 KELETALRQHQNVIEDQAQEIEYLTKQTVALREVNDSRLRIYEQLELSIQDLERANHRLA 445
++ E ++R ++ E EI+ L ++ + L EVN+ Y+Q +I LER
Sbjct: 275 RDAEESVRVFRDQSEQAETEIKALKQELLKLNEVNEDLNVRYQQCLETISKLER-----E 329
Query: 446 VDHAADKKHIKSLCSNI 496
V HA D + K L S +
Sbjct: 330 VSHAQD--NAKRLSSEV 344
>At2g40630.1 68415.m05011 expressed protein
Length = 535
Score = 28.7 bits (61), Expect = 5.0
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = +3
Query: 153 KKFGGNEELEQDDLTSRRCMLDDLQLAAELGKTLSNATRNS-RQPFASIKMLLKI 314
+K GN E+D+L S+R + DL A+ S+ NS +QP S + L K+
Sbjct: 24 EKRNGNGLDEKDELGSKRVKVPDLASDAKTSSLQSHGNSNSVQQPNLSSEKLSKV 78
>At5g46090.1 68418.m05667 expressed protein contains Pfam profile
PF05078: Protein of unknown function (DUF679);
expression supported by MPSS
Length = 214
Score = 28.3 bits (60), Expect = 6.5
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = -1
Query: 549 VKFVHSLL*FFAFGSTVSMFEHNDLMCF 466
+ FVH+++ F FG+ V +F+ N + CF
Sbjct: 144 IDFVHAIMSFLVFGAVV-LFDQNVVNCF 170
>At3g28790.1 68416.m03593 expressed protein
Length = 608
Score = 28.3 bits (60), Expect = 6.5
Identities = 23/98 (23%), Positives = 41/98 (41%), Gaps = 3/98 (3%)
Frame = +3
Query: 123 TMSEVMDLV---KKKFGGNEELEQDDLTSRRCMLDDLQLAAELGKTLSNATRNSRQPFAS 293
T SEV + +KK+ GN EL+ + M +L+ K L R++ A
Sbjct: 449 TSSEVNSFISNLEKKYTGNSELKVFFEKLKTSMSASAKLSTSNAKELVTGMRSAASKIAE 508
Query: 294 IKMLLKIKHKKSNILQSKRLLCER*MTQG*GFMSNWNS 407
M + + KS ++ C++ + Q + + NS
Sbjct: 509 AMMFVSSRFSKSEETKTSMASCQQEVMQSLKELQDINS 546
>At2g34230.1 68415.m04188 hypothetical protein contains Pfam
profiles PF04780: Protein of unknown function (DUF629),
PF04781: Protein of unknown function (DUF627)
Length = 716
Score = 28.3 bits (60), Expect = 6.5
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +3
Query: 225 QLAAELGKTLSNATRNSRQPFASIKMLLKIK-HKKSNILQSKRLLCE 362
QL ++ ++L + N + +K L ++ H SN+L KRLLCE
Sbjct: 416 QLTTDVRESLVSKVVNQLWENSLVKERLDLEGHTNSNLLLDKRLLCE 462
>At2g33610.1 68415.m04119 SWIRM domain-containing protein /
DNA-binding family protein contains similarity to
SWI/SNF complex 170 KDa subunit [Homo sapiens]
gi|1549241|gb|AAC50694; contains Pfam domain PF04433:
SWIRM domain, PF00249: Myb-like DNA-binding domain
Length = 469
Score = 28.3 bits (60), Expect = 6.5
Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 6/86 (6%)
Frame = +2
Query: 269 ELETALRQHQNVIEDQAQEIEYLTKQT--VALREVNDSRLRIYEQLELSIQ----DLERA 430
E E A +++IE + E+E K+T V ++++ D R+ +E+L+L ++ LE
Sbjct: 384 ESERAWADAKSLIEKEEHEVEGAIKETVEVEMKKIRD-RIVHFEKLDLEMERSRKQLEEV 442
Query: 431 NHRLAVDHAADKKHIKSLCSNIDTVE 508
+ L VD H + D +E
Sbjct: 443 RNLLFVDQLNIFFHTRKARKTEDRIE 468
>At1g52080.1 68414.m05875 actin binding protein family contains
Prosite PS00019: Actinin-type actin-binding domain
signature 1; similar to actin binding protein
(GI:28071265) [Arabidopsis thaliana]; similar to A-type
inclusion protein (ATI) (Swiss-Prot:P16602) [Cowpox
virus]
Length = 573
Score = 28.3 bits (60), Expect = 6.5
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
Frame = +2
Query: 245 ENPIERNKELETALRQHQNVIEDQAQEIEYLTKQTVALREVNDSRLRIYEQ----LELSI 412
EN I R + ALR+ + +ED+ E L +Q E+ SRL++ + I
Sbjct: 138 ENEINRLRNTVRALRERERCLEDKLLEYYSLKEQQKIAMELR-SRLKLNQMETKVFNFKI 196
Query: 413 QDLERANHRLAVD 451
+ L+ N +L +
Sbjct: 197 KKLQAENEKLKAE 209
>At4g18425.1 68417.m02734 expressed protein contains Pfam profile
PF05078: Protein of unknown function (DUF679)
Length = 213
Score = 27.9 bits (59), Expect = 8.7
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = -1
Query: 549 VKFVHSLL*FFAFGSTVSMFEHNDLMCF 466
+ FVH+ + F FG+ V +F+ N + CF
Sbjct: 143 IDFVHAFMSLFVFGAVV-LFDRNAVNCF 169
>At2g32670.1 68415.m03994 synaptobrevin family protein similar to
vesicle-associated membrane protein 7 [Rattus
norvegicus] GI:9502258, SP|P51809 Synaptobrevin-like
protein 1 {Homo sapiens}; contains Pfam profile PF00957:
Synaptobrevin
Length = 285
Score = 27.9 bits (59), Expect = 8.7
Identities = 15/64 (23%), Positives = 26/64 (40%)
Frame = +2
Query: 209 YARRFATGGRTRENPIERNKELETALRQHQNVIEDQAQEIEYLTKQTVALREVNDSRLRI 388
+ +R+ G T N+E + L++H D EI L K + EV +
Sbjct: 154 FNKRYGGGKATTAQANSLNREFGSKLKEHMQYCVDHPDEISKLAKVKAQVTEVKGVMMEN 213
Query: 389 YEQL 400
E++
Sbjct: 214 IEKV 217
>At1g11690.1 68414.m01342 hypothetical protein
Length = 247
Score = 27.9 bits (59), Expect = 8.7
Identities = 26/105 (24%), Positives = 48/105 (45%), Gaps = 4/105 (3%)
Frame = +2
Query: 236 RTRENPIERNKELETA---LRQHQNVIEDQAQE-IEYLTKQTVALREVNDSRLRIYEQLE 403
R +E E+ K ET +R +N E+ ++YL ++ RE +L+
Sbjct: 48 RIKELEAEKFKSEETIRCLIRNQRNEKEETTNPFVDYLKEKLSKEREEKKRVKAENSRLK 107
Query: 404 LSIQDLERANHRLAVDHAADKKHIKSLCSNIDTVEPNAKNYKRLW 538
I D+E + +RL + +K + L + ID ++ N +R+W
Sbjct: 108 KKILDMESSVNRLRRERDTMEKVCEELVTRIDELKVNT---RRVW 149
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,001,344
Number of Sequences: 28952
Number of extensions: 302635
Number of successful extensions: 894
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 861
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 893
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1892353600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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