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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30772
         (825 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g15780.1 68417.m02402 synaptobrevin-related family protein si...    34   0.100
At1g05320.1 68414.m00539 myosin-related similar to non-muscle my...    34   0.13 
At1g63300.1 68414.m07156 expressed protein similar to Intracellu...    33   0.30 
At3g30420.1 68416.m03847 hypothetical protein low similarity to ...    31   0.93 
At1g18920.1 68414.m02355 hypothetical protein contains Pfam prof...    30   2.1  
At1g62780.1 68414.m07086 expressed protein                             29   2.8  
At1g74770.1 68414.m08663 expressed protein                             29   3.7  
At1g12270.1 68414.m01419 stress-inducible protein, putative simi...    29   3.7  
At1g04760.1 68414.m00472 synaptobrevin family protein similar to...    29   3.7  
At4g14760.1 68417.m02271 M protein repeat-containing protein con...    29   5.0  
At2g40630.1 68415.m05011 expressed protein                             29   5.0  
At5g46090.1 68418.m05667 expressed protein contains Pfam profile...    28   6.5  
At3g28790.1 68416.m03593 expressed protein                             28   6.5  
At2g34230.1 68415.m04188 hypothetical protein contains Pfam prof...    28   6.5  
At2g33610.1 68415.m04119 SWIRM domain-containing protein / DNA-b...    28   6.5  
At1g52080.1 68414.m05875 actin binding protein family contains P...    28   6.5  
At4g18425.1 68417.m02734 expressed protein contains Pfam profile...    28   8.7  
At2g32670.1 68415.m03994 synaptobrevin family protein similar to...    28   8.7  
At1g11690.1 68414.m01342 hypothetical protein                          28   8.7  

>At4g15780.1 68417.m02402 synaptobrevin-related family protein
           similar to Vesicle-associated membrane protein 722
           (AtVAMP722) Synaptobrevin-related protein 1 (SP:P47192)
           {Arabidopsis thaliana}
          Length = 194

 Score = 34.3 bits (75), Expect = 0.100
 Identities = 18/58 (31%), Positives = 27/58 (46%)
 Frame = +2

Query: 209 YARRFATGGRTRENPIERNKELETALRQHQNVIEDQAQEIEYLTKQTVALREVNDSRL 382
           + +R+  G  +       NKE    +++H N I D A+EIE L K    + EV    L
Sbjct: 90  FKKRYGGGKASTAIAKSLNKEFGPVMKEHMNYIVDHAEEIEKLIKVKAQVSEVKSIML 147


>At1g05320.1 68414.m00539 myosin-related similar to non-muscle
           myosin II heavy chain (GI:19879404) [Loligo pealei];
           ESTs gb|AA042402,gb|ATTS1380 come from this gene
          Length = 828

 Score = 33.9 bits (74), Expect = 0.13
 Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
 Frame = +2

Query: 266 KELETALRQHQNVIED-QAQEIEYLTKQTVALREVNDSRLRIYEQLELSIQDLERANHRL 442
           K+L T L+ H+NVIE+ + Q +E          EV ++ L++   LE +I++LE+ N  L
Sbjct: 429 KDLITKLKSHENVIEEHKRQVLEASGVADTRKVEVEEALLKL-NTLESTIEELEKENGDL 487

Query: 443 A 445
           A
Sbjct: 488 A 488


>At1g63300.1 68414.m07156 expressed protein similar to Intracellular
           protein transport protein USO1 (Swiss-Prot:P25386)
           [Saccharomyces cerevisiae]; similar to Myosin II heavy
           chain, non muscle (Swiss-Prot:P08799) [Dictyostelium
           discoideum]
          Length = 1029

 Score = 32.7 bits (71), Expect = 0.30
 Identities = 20/64 (31%), Positives = 34/64 (53%)
 Frame = +2

Query: 236 RTRENPIERNKELETALRQHQNVIEDQAQEIEYLTKQTVALREVNDSRLRIYEQLELSIQ 415
           R  EN  E++ E++   R  ++V  +  QEI+ L ++   L++  DS +   EQ E    
Sbjct: 700 RMLENLDEKSNEIDNQKRHEEDVTANLNQEIKILKEEIENLKKNQDSLMLQAEQAENLRV 759

Query: 416 DLER 427
           DLE+
Sbjct: 760 DLEK 763


>At3g30420.1 68416.m03847 hypothetical protein low similarity to
           SP|Q9UUA2 DNA repair and recombination protein pif1,
           mitochondrial precursor {Schizosaccharomyces pombe}
          Length = 837

 Score = 31.1 bits (67), Expect = 0.93
 Identities = 21/56 (37%), Positives = 31/56 (55%)
 Frame = +2

Query: 269 ELETALRQHQNVIEDQAQEIEYLTKQTVALREVNDSRLRIYEQLELSIQDLERANH 436
           E+ET LRQH+  + D     E    +   L EVN+S LR  ++ +++I D ER  H
Sbjct: 293 EIETLLRQHEKSLSDYP---EMPQPEKSILEEVNNSLLR--QEFQINI-DKERETH 342


>At1g18920.1 68414.m02355 hypothetical protein contains Pfam profile
           PF03794: Domain of Unknown function
          Length = 980

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 20/78 (25%), Positives = 40/78 (51%), Gaps = 8/78 (10%)
 Frame = +2

Query: 311 DQAQEIEYLTKQTVALREVNDSRLRI-------YEQLELSIQDLERANHRLAVDHA-ADK 466
           D   E+E+L K +  L E+ +  + +       YE+L +S+QD+ ++ H+L  +H   ++
Sbjct: 688 DHELEVEHLNKVSFLLNELAELNMLVLDHKNVKYEKLCMSLQDICKSIHKLLSEHLHREE 747

Query: 467 KHIKSLCSNIDTVEPNAK 520
             +  L  +  T+E   K
Sbjct: 748 TELWCLFRDCFTIEEQEK 765


>At1g62780.1 68414.m07086 expressed protein
          Length = 237

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 31/99 (31%), Positives = 39/99 (39%), Gaps = 5/99 (5%)
 Frame = +2

Query: 182 ARRSHLTSL-YARRFATGGRTRE---NPIERNKELETALRQHQNVIEDQAQEIEYLTKQT 349
           A+  H+  L + RR       RE     +   KE   ALRQ + V +  A+ IEY     
Sbjct: 41  AQTGHIARLEFKRRLERDSEAREAFQKQLREEKERRQALRQSRVVPDTAAELIEYFLDTE 100

Query: 350 VALREVNDSRLRIYEQLELSIQ-DLERANHRLAVDHAAD 463
               E   +RLR     E   Q  LE    R AV   AD
Sbjct: 101 AQEIEYEIARLRGRLNDEFFAQIRLEIGQIRFAVTKTAD 139


>At1g74770.1 68414.m08663 expressed protein
          Length = 985

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 21/85 (24%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
 Frame = +2

Query: 269 ELETALRQHQNVIEDQAQEIEYLTKQTVALREVNDSRLRIYEQLELSIQDLERANHRLAV 448
           ELET      + I ++  E+  L   T+     +  R   YE+L LS++++ ++ H+L  
Sbjct: 695 ELETKHFDKVSFILNEMSELNMLVS-TINTTAADHDRKMKYERLCLSLREICKSMHKLLS 753

Query: 449 DHAA-DKKHIKSLCSNIDTVEPNAK 520
           +H   ++  +  L  N  ++E   K
Sbjct: 754 EHIQHEETELWGLFRNCFSIEEQEK 778


>At1g12270.1 68414.m01419 stress-inducible protein, putative similar
           to sti (stress inducible protein) [Glycine max]
           GI:872116; contains Pfam profile PF00515 TPR Domain
          Length = 572

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +2

Query: 248 NPIERNKELETALRQHQNVIEDQAQEIEYLTKQTVALREV 367
           N   + K+ ETA++ +   IE   ++I YLT +     E+
Sbjct: 252 NAAYKKKDFETAIQHYSTAIEIDDEDISYLTNRAAVYLEM 291


>At1g04760.1 68414.m00472 synaptobrevin family protein similar to
           Vesicle-associated membrane protein 722  (AtVAMP722)
           Synaptobrevin-related protein 1 (SP:P47192) {Arabidopsis
           thaliana}
          Length = 220

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 15/64 (23%), Positives = 28/64 (43%)
 Frame = +2

Query: 209 YARRFATGGRTRENPIERNKELETALRQHQNVIEDQAQEIEYLTKQTVALREVNDSRLRI 388
           + +R+  G  +       NKE  + L++H     D  +EI  L+K    + EV    +  
Sbjct: 89  FNKRYGGGKASTAKANSLNKEFGSKLKEHMQYCADHPEEISKLSKVKAQVTEVKGVMMEN 148

Query: 389 YEQL 400
            E++
Sbjct: 149 IEKV 152


>At4g14760.1 68417.m02271 M protein repeat-containing protein
           contains Pfam profile: PF02370 M protein repeat
          Length = 1676

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 23/77 (29%), Positives = 38/77 (49%)
 Frame = +2

Query: 266 KELETALRQHQNVIEDQAQEIEYLTKQTVALREVNDSRLRIYEQLELSIQDLERANHRLA 445
           ++ E ++R  ++  E    EI+ L ++ + L EVN+     Y+Q   +I  LER      
Sbjct: 275 RDAEESVRVFRDQSEQAETEIKALKQELLKLNEVNEDLNVRYQQCLETISKLER-----E 329

Query: 446 VDHAADKKHIKSLCSNI 496
           V HA D  + K L S +
Sbjct: 330 VSHAQD--NAKRLSSEV 344


>At2g40630.1 68415.m05011 expressed protein
          Length = 535

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = +3

Query: 153 KKFGGNEELEQDDLTSRRCMLDDLQLAAELGKTLSNATRNS-RQPFASIKMLLKI 314
           +K  GN   E+D+L S+R  + DL   A+     S+   NS +QP  S + L K+
Sbjct: 24  EKRNGNGLDEKDELGSKRVKVPDLASDAKTSSLQSHGNSNSVQQPNLSSEKLSKV 78


>At5g46090.1 68418.m05667 expressed protein contains Pfam profile
           PF05078: Protein of unknown function (DUF679);
           expression supported by MPSS
          Length = 214

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = -1

Query: 549 VKFVHSLL*FFAFGSTVSMFEHNDLMCF 466
           + FVH+++ F  FG+ V +F+ N + CF
Sbjct: 144 IDFVHAIMSFLVFGAVV-LFDQNVVNCF 170


>At3g28790.1 68416.m03593 expressed protein 
          Length = 608

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 23/98 (23%), Positives = 41/98 (41%), Gaps = 3/98 (3%)
 Frame = +3

Query: 123 TMSEVMDLV---KKKFGGNEELEQDDLTSRRCMLDDLQLAAELGKTLSNATRNSRQPFAS 293
           T SEV   +   +KK+ GN EL+      +  M    +L+    K L    R++    A 
Sbjct: 449 TSSEVNSFISNLEKKYTGNSELKVFFEKLKTSMSASAKLSTSNAKELVTGMRSAASKIAE 508

Query: 294 IKMLLKIKHKKSNILQSKRLLCER*MTQG*GFMSNWNS 407
             M +  +  KS   ++    C++ + Q    + + NS
Sbjct: 509 AMMFVSSRFSKSEETKTSMASCQQEVMQSLKELQDINS 546


>At2g34230.1 68415.m04188 hypothetical protein contains Pfam
           profiles PF04780: Protein of unknown function (DUF629),
           PF04781: Protein of unknown function (DUF627)
          Length = 716

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = +3

Query: 225 QLAAELGKTLSNATRNSRQPFASIKMLLKIK-HKKSNILQSKRLLCE 362
           QL  ++ ++L +   N     + +K  L ++ H  SN+L  KRLLCE
Sbjct: 416 QLTTDVRESLVSKVVNQLWENSLVKERLDLEGHTNSNLLLDKRLLCE 462


>At2g33610.1 68415.m04119 SWIRM domain-containing protein /
           DNA-binding family protein contains similarity to
           SWI/SNF complex 170 KDa subunit [Homo sapiens]
           gi|1549241|gb|AAC50694; contains Pfam domain PF04433:
           SWIRM domain, PF00249: Myb-like DNA-binding domain
          Length = 469

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 6/86 (6%)
 Frame = +2

Query: 269 ELETALRQHQNVIEDQAQEIEYLTKQT--VALREVNDSRLRIYEQLELSIQ----DLERA 430
           E E A    +++IE +  E+E   K+T  V ++++ D R+  +E+L+L ++     LE  
Sbjct: 384 ESERAWADAKSLIEKEEHEVEGAIKETVEVEMKKIRD-RIVHFEKLDLEMERSRKQLEEV 442

Query: 431 NHRLAVDHAADKKHIKSLCSNIDTVE 508
            + L VD      H +      D +E
Sbjct: 443 RNLLFVDQLNIFFHTRKARKTEDRIE 468


>At1g52080.1 68414.m05875 actin binding protein family contains
           Prosite PS00019: Actinin-type actin-binding domain
           signature 1; similar to actin binding protein
           (GI:28071265) [Arabidopsis thaliana]; similar to A-type
           inclusion protein (ATI) (Swiss-Prot:P16602) [Cowpox
           virus]
          Length = 573

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
 Frame = +2

Query: 245 ENPIERNKELETALRQHQNVIEDQAQEIEYLTKQTVALREVNDSRLRIYEQ----LELSI 412
           EN I R +    ALR+ +  +ED+  E   L +Q     E+  SRL++ +         I
Sbjct: 138 ENEINRLRNTVRALRERERCLEDKLLEYYSLKEQQKIAMELR-SRLKLNQMETKVFNFKI 196

Query: 413 QDLERANHRLAVD 451
           + L+  N +L  +
Sbjct: 197 KKLQAENEKLKAE 209


>At4g18425.1 68417.m02734 expressed protein contains Pfam profile
           PF05078: Protein of unknown function (DUF679)
          Length = 213

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -1

Query: 549 VKFVHSLL*FFAFGSTVSMFEHNDLMCF 466
           + FVH+ +  F FG+ V +F+ N + CF
Sbjct: 143 IDFVHAFMSLFVFGAVV-LFDRNAVNCF 169


>At2g32670.1 68415.m03994 synaptobrevin family protein similar to
           vesicle-associated membrane protein 7 [Rattus
           norvegicus] GI:9502258, SP|P51809 Synaptobrevin-like
           protein 1 {Homo sapiens}; contains Pfam profile PF00957:
           Synaptobrevin
          Length = 285

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 15/64 (23%), Positives = 26/64 (40%)
 Frame = +2

Query: 209 YARRFATGGRTRENPIERNKELETALRQHQNVIEDQAQEIEYLTKQTVALREVNDSRLRI 388
           + +R+  G  T       N+E  + L++H     D   EI  L K    + EV    +  
Sbjct: 154 FNKRYGGGKATTAQANSLNREFGSKLKEHMQYCVDHPDEISKLAKVKAQVTEVKGVMMEN 213

Query: 389 YEQL 400
            E++
Sbjct: 214 IEKV 217


>At1g11690.1 68414.m01342 hypothetical protein
          Length = 247

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 26/105 (24%), Positives = 48/105 (45%), Gaps = 4/105 (3%)
 Frame = +2

Query: 236 RTRENPIERNKELETA---LRQHQNVIEDQAQE-IEYLTKQTVALREVNDSRLRIYEQLE 403
           R +E   E+ K  ET    +R  +N  E+     ++YL ++    RE          +L+
Sbjct: 48  RIKELEAEKFKSEETIRCLIRNQRNEKEETTNPFVDYLKEKLSKEREEKKRVKAENSRLK 107

Query: 404 LSIQDLERANHRLAVDHAADKKHIKSLCSNIDTVEPNAKNYKRLW 538
             I D+E + +RL  +    +K  + L + ID ++ N    +R+W
Sbjct: 108 KKILDMESSVNRLRRERDTMEKVCEELVTRIDELKVNT---RRVW 149


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,001,344
Number of Sequences: 28952
Number of extensions: 302635
Number of successful extensions: 894
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 861
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 893
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1892353600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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