Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30770
         (827 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    24   1.7  
AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory recept...    23   2.2  
AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    22   6.8  
AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine recombi...    21   9.0  

>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 11/42 (26%), Positives = 24/42 (57%)
 Frame = -2

Query: 214 LFIASTHMQKTVNMHLNRLFDSKCAESLMINASKSNYLKFKI 89
           L +AS  + + +  HL ++F+      + IN  KSN+++ ++
Sbjct: 461 LLVASETLNEHLE-HLRQVFEKLKQARMTINLEKSNFIQKEV 501


>AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory receptor
           candidate 40 protein.
          Length = 373

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 9/21 (42%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
 Frame = -2

Query: 517 KYTAFFVNTY-NIINSFNDNI 458
           KYT +F+NTY ++ N F  ++
Sbjct: 345 KYTTYFLNTYPHLFNFFEFSV 365


>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
          transcription factor protein.
          Length = 228

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +3

Query: 9  KQYQNISSI*YCKN 50
          + Y NISSI  CKN
Sbjct: 31 RTYNNISSISECKN 44


>AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine
           recombinase protein.
          Length = 340

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -3

Query: 642 FVQMLRLPTFVNRRLIC 592
           F  +LRLP F  + L+C
Sbjct: 211 FQPLLRLPKFKKKPLLC 227


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,026
Number of Sequences: 336
Number of extensions: 4125
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 22725411
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)