Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30770
         (827 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    29   0.80 
SPBC28F2.07 |sfr1|dds20, mug13|Swi five-dependent recombination ...    27   3.2  
SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple ca...    27   3.2  
SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces pomb...    26   7.5  
SPAC644.17c |mrpl9||mitochondrial ribosomal protein subunit L9|S...    25   9.9  

>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 29.1 bits (62), Expect = 0.80
 Identities = 15/57 (26%), Positives = 31/57 (54%)
 Frame = +1

Query: 535 KLTPKCFLLYT*INK*DLFTYESSINKGGQSEHLDKKKFIDMVNTD*FEYNRLLQRI 705
           +L  KC +L+T  N+ DL+   +S+ K    +++ K+ F  + + +     +LL+ I
Sbjct: 597 QLQEKCDVLHTTFNQLDLYVGTTSVGKSSVLDNILKRIFNSLTSINDSNIEKLLESI 653


>SPBC28F2.07 |sfr1|dds20, mug13|Swi five-dependent recombination
           repair protein Sfr1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 299

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -2

Query: 193 MQKTVNMHLNRLFDSKCAESLMINASKSN 107
           M +T+N  LN    S+C E L ++ S+S+
Sbjct: 1   MSQTINSELNENATSQCKEDLKVSLSESD 29


>SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple
           cancers-1 homolog 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 676

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 12/29 (41%), Positives = 20/29 (68%)
 Frame = -2

Query: 490 YNIINSFNDNILVMFQSLHLDAREFRQIL 404
           Y +IN+FNDN+ ++ + L  D R+F  I+
Sbjct: 505 YFLINNFNDNLHII-ELLQKDKRKFEPII 532


>SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 967

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 13/49 (26%), Positives = 22/49 (44%)
 Frame = -3

Query: 717 GFDPYSLEETIIFKSICIDHINKFFFVQMLRLPTFVNRRLICKQVLFVY 571
           GFD      T+   +I   +IN  FF+ + RL      R + +  +F +
Sbjct: 740 GFDLLDRVFTVFNANILAPYINHIFFLLLSRLKNSRTERFVLRCTIFFF 788


>SPAC644.17c |mrpl9||mitochondrial ribosomal protein subunit
           L9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 259

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +2

Query: 638 TKKNLLIWSIQIDLNIIV 691
           T KNLL+W++  DL  I+
Sbjct: 215 TVKNLLVWAVDADLECIL 232


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,301,039
Number of Sequences: 5004
Number of extensions: 65636
Number of successful extensions: 139
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)