Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30770
         (827 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7972| Best HMM Match : RVT_1 (HMM E-Value=5.8e-29)                  33   0.37 
SB_39979| Best HMM Match : RVT_1 (HMM E-Value=4.6e-12)                 32   0.49 
SB_8080| Best HMM Match : No HMM Matches (HMM E-Value=.)               32   0.49 
SB_14797| Best HMM Match : RVT_1 (HMM E-Value=7.9e-33)                 30   2.6  

>SB_7972| Best HMM Match : RVT_1 (HMM E-Value=5.8e-29)
          Length = 382

 Score = 32.7 bits (71), Expect = 0.37
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = -2

Query: 199 THMQKTVNMHLNRLFDSKCAESLMINASKSNYLKF 95
           T+++ TVN  L  ++   CA  L +N  K+N++ F
Sbjct: 342 TNLESTVNYELKHIYTWLCANKLFLNIDKTNFVLF 376


>SB_39979| Best HMM Match : RVT_1 (HMM E-Value=4.6e-12)
          Length = 792

 Score = 32.3 bits (70), Expect = 0.49
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = -2

Query: 199 THMQKTVNMHLNRLFDSKCAESLMINASKSNYLKF 95
           T+++ TVN  L  ++   CA  L +N  K+N++ F
Sbjct: 442 TNLESTVNYELKHIYTWLCANKLSLNIDKTNFVLF 476


>SB_8080| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 273

 Score = 32.3 bits (70), Expect = 0.49
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = -2

Query: 199 THMQKTVNMHLNRLFDSKCAESLMINASKSNYLKF 95
           T+++ TVN  L  ++   CA  L +N  K+N++ F
Sbjct: 208 TNLESTVNYELKHIYTWLCANKLSLNIDKTNFVLF 242


>SB_14797| Best HMM Match : RVT_1 (HMM E-Value=7.9e-33)
          Length = 252

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -2

Query: 199 THMQKTVNMHLNRLFDSKCAESLMINASKSNYLKF 95
           T+++ TV   L  ++   CA  L +N  K+N++ F
Sbjct: 208 TNLESTVKYELKHIYTWLCANKLSLNIDKTNFVLF 242


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,924,490
Number of Sequences: 59808
Number of extensions: 424726
Number of successful extensions: 637
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 583
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 637
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2323539746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)