Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30770
         (827 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82274-1|CAB05226.1|  165|Caenorhabditis elegans Hypothetical pr...    29   3.1  
AL023856-6|CAC15864.1|  332|Caenorhabditis elegans Hypothetical ...    28   7.1  
Z79755-10|CAB02109.1| 2034|Caenorhabditis elegans Hypothetical p...    28   9.4  
Z74476-6|CAA98967.1| 1139|Caenorhabditis elegans Hypothetical pr...    28   9.4  
Z74473-6|CAA98951.1| 1139|Caenorhabditis elegans Hypothetical pr...    28   9.4  
U57652-1|AAB02243.1| 2034|Caenorhabditis elegans FER-1 protein.        28   9.4  
U20168-1|AAA66364.1| 1139|Caenorhabditis elegans Lin-25 protein ...    28   9.4  

>Z82274-1|CAB05226.1|  165|Caenorhabditis elegans Hypothetical
           protein JC8.3a protein.
          Length = 165

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = +2

Query: 443 LKHN*DIVIETVNNIVRVNKERCVLKKL 526
           +KHN D+ ++T+  I R+ + R + KKL
Sbjct: 98  VKHNGDLTVDTIIKIARIMRPRSMAKKL 125


>AL023856-6|CAC15864.1|  332|Caenorhabditis elegans Hypothetical
           protein Y94A7B.9 protein.
          Length = 332

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +2

Query: 635 WTKKNLLIWSIQIDLNIIVSSKEYGSKPAF 724
           W+  NL +WS  +D+++ +  + Y   PAF
Sbjct: 47  WSLFNLYLWSFALDISLSLFIQPYFCSPAF 76


>Z79755-10|CAB02109.1| 2034|Caenorhabditis elegans Hypothetical
            protein F43G9.6 protein.
          Length = 2034

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 14/45 (31%), Positives = 29/45 (64%)
 Frame = +1

Query: 583  DLFTYESSINKGGQSEHLDKKKFIDMVNTD*FEYNRLLQRIRVKT 717
            DL  Y S I    +S+H ++ + +D+V T+  E++++++ +RV T
Sbjct: 1230 DLHKYVSHIVPKVKSDHAERWEQLDLVITE--EFDQIIRMVRVPT 1272


>Z74476-6|CAA98967.1| 1139|Caenorhabditis elegans Hypothetical
           protein F56H9.5 protein.
          Length = 1139

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = -3

Query: 786 TKILLERHLDK*PG*GINFYLNAGFDPYSLEETIIFK 676
           T ILL R L K P   IN ++N G      E+T+ +K
Sbjct: 507 TFILLSRILIKNPSVSINMFVNGGPGKSDAEQTMFYK 543


>Z74473-6|CAA98951.1| 1139|Caenorhabditis elegans Hypothetical
           protein F56H9.5 protein.
          Length = 1139

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = -3

Query: 786 TKILLERHLDK*PG*GINFYLNAGFDPYSLEETIIFK 676
           T ILL R L K P   IN ++N G      E+T+ +K
Sbjct: 507 TFILLSRILIKNPSVSINMFVNGGPGKSDAEQTMFYK 543


>U57652-1|AAB02243.1| 2034|Caenorhabditis elegans FER-1 protein.
          Length = 2034

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 14/45 (31%), Positives = 29/45 (64%)
 Frame = +1

Query: 583  DLFTYESSINKGGQSEHLDKKKFIDMVNTD*FEYNRLLQRIRVKT 717
            DL  Y S I    +S+H ++ + +D+V T+  E++++++ +RV T
Sbjct: 1230 DLHKYVSHIVPKVKSDHAERWEQLDLVITE--EFDQIIRMVRVPT 1272


>U20168-1|AAA66364.1| 1139|Caenorhabditis elegans Lin-25 protein
           protein.
          Length = 1139

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = -3

Query: 786 TKILLERHLDK*PG*GINFYLNAGFDPYSLEETIIFK 676
           T ILL R L K P   IN ++N G      E+T+ +K
Sbjct: 507 TFILLSRILIKNPSVSINMFVNGGPGKSDAEQTMFYK 543


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,856,013
Number of Sequences: 27780
Number of extensions: 355470
Number of successful extensions: 698
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 690
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 698
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2050970610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)