Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30770
         (827 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g66890.1 68418.m08432 disease resistance protein (CC-NBS-LRR ...    29   3.8  
At3g08890.2 68416.m01035 expressed protein contains Pfam profile...    28   6.6  
At3g08890.1 68416.m01034 expressed protein contains Pfam profile...    28   6.6  
At1g03210.1 68414.m00299 phenazine biosynthesis PhzC/PhzF family...    28   8.7  

>At5g66890.1 68418.m08432 disease resistance protein (CC-NBS-LRR
           class), putative domain signature NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 415

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
 Frame = -2

Query: 217 VLFIASTHMQKTVNMHLNRLFDSKC--AESLMINASKSNYLKFKIII*MKYSKVIIIL 50
           ++  AS     T +   +  F+  C   E+L++N S SNY     I  MK  KV+II+
Sbjct: 129 IVINASLFSISTDDSFASSWFEMDCPNVEALVLNISSSNYALPNFIATMKELKVVIII 186


>At3g08890.2 68416.m01035 expressed protein contains Pfam profile
           PF04398: Protein of unknown function, DUF538
          Length = 170

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 15/40 (37%), Positives = 24/40 (60%)
 Frame = +2

Query: 596 MSRLLTKVGNLSIWTKKNLLIWSIQIDLNIIVSSKEYGSK 715
           M ++L KVG+  +  K N  + S+  D+N + SS E G+K
Sbjct: 1   MDQILNKVGSYWLGKKANKQLDSVGDDINSLSSSIEGGTK 40


>At3g08890.1 68416.m01034 expressed protein contains Pfam profile
           PF04398: Protein of unknown function, DUF538
          Length = 170

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 15/40 (37%), Positives = 24/40 (60%)
 Frame = +2

Query: 596 MSRLLTKVGNLSIWTKKNLLIWSIQIDLNIIVSSKEYGSK 715
           M ++L KVG+  +  K N  + S+  D+N + SS E G+K
Sbjct: 1   MDQILNKVGSYWLGKKANKQLDSVGDDINSLSSSIEGGTK 40


>At1g03210.1 68414.m00299 phenazine biosynthesis PhzC/PhzF family
           protein contains Pfam profile: PF02567 phenazine
           biosynthesis-like protein
          Length = 286

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +1

Query: 571 INK*DLFTYESSINKGGQSEHLDKKK 648
           +NK D F Y++S   G    HLDK+K
Sbjct: 242 MNKCDFFAYQASSRGGTLKVHLDKEK 267


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,190,180
Number of Sequences: 28952
Number of extensions: 301133
Number of successful extensions: 560
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 554
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 560
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1902108000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)