Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30769
         (847 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1A10.07c |||sphingolipid biosynthesis protein|Schizosacchar...    33   0.067
SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cu...    27   4.4  
SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c...    27   4.4  
SPBC409.18 |||phosphatidic acid phosphatase |Schizosaccharomyces...    27   4.4  
SPCPB16A4.02c |||conserved fungal protein|Schizosaccharomyces po...    26   7.7  
SPBC354.05c |sre2||membrane-tethered transcription factor |Schiz...    26   7.7  
SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3 |Schizos...    26   7.7  

>SPAPB1A10.07c |||sphingolipid biosynthesis
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 32.7 bits (71), Expect = 0.067
 Identities = 26/80 (32%), Positives = 34/80 (42%), Gaps = 7/80 (8%)
 Frame = -3

Query: 299 CR*DSNCFSI--AHRLFIT--NFRL-QHHKTGRCPTENTQPIKDHNSLKKMKTYL--IIS 141
           C+ D  C+S+   HRL  T   F L        C T +   IK  N L   K  L  ++ 
Sbjct: 82  CQNDGKCYSVIAVHRLSFTLVMFHLFLAFILSLCNTRSRVAIKIQNGLWPFKIVLWFVLG 141

Query: 140 VRSIFIPNTYTLFWIEAFSV 81
           + S FIP  +  FW    SV
Sbjct: 142 IFSFFIPTKFLSFWGNIISV 161


>SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cuf1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +1

Query: 253 INKRCAIEKQLLSHLQCFSVHKNPVSLENNY 345
           +N   A+EK+ +SH       K+ V+  NNY
Sbjct: 352 LNHISALEKETISHTDLHHTFKHEVNSSNNY 382


>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1315

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 17/51 (33%), Positives = 22/51 (43%)
 Frame = -3

Query: 215 CPTENTQPIKDHNSLKKMKTYLIISVRSIFIPNTYTLFWIEAFSVGPRQIR 63
           C  ++    K   SLKK K  + I  R   I  +YTLF   A    P  +R
Sbjct: 813 CSADDVLIFKAVESLKKAKDTVDIEERQSLIELSYTLFKKAAHVFTPEDLR 863


>SPBC409.18 |||phosphatidic acid phosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 279

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -3

Query: 836 NTVEKPQTYFNAHCQSSKSTPKQNTV 759
           N V +P+  F A CQ  +STPK   V
Sbjct: 112 NAVGRPRPDFLARCQPFESTPKTGLV 137


>SPCPB16A4.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 328

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 17/57 (29%), Positives = 27/57 (47%)
 Frame = -2

Query: 246 FPFTTS*NGTVSNRKHSAYQRSQFIKKNENLFDNLCTIHFHSEHIHTILDRGIFCWA 76
           +PF      T++  +HSA  ++ +   +EN      TIH+    +H  L R   CWA
Sbjct: 192 YPFNPQEVNTLNKHRHSASLQNLYKLLDENKVLMQGTIHW----LHGNLHRWSKCWA 244


>SPBC354.05c |sre2||membrane-tethered transcription factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 793

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
 Frame = -3

Query: 779 TPKQNTVVH-LLTLLKF-CFNHGAALMPDSLKYLWVISQYDKIALNTFLFRLMVLRIPI 609
           +P  ++++  LL LL F CF     L P++    W  S Y    L       ++  +PI
Sbjct: 710 SPSLHSILRFLLLLLAFLCFAMHILLTPEATLRKWASSIYLSFRLECVFISFLIFSVPI 768


>SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 556

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +1

Query: 280 QLLSHLQCFSVHKNPVSLEN 339
           QLL HL C +V++  VS EN
Sbjct: 7   QLLDHLDCNAVYRGYVSQEN 26


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,546,581
Number of Sequences: 5004
Number of extensions: 73181
Number of successful extensions: 164
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)