Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30769
         (847 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0786 - 5881178-5881303,5881523-5881627,5882078-5882169,588...    29   3.5  

>06_01_0786 -
           5881178-5881303,5881523-5881627,5882078-5882169,
           5882267-5882336,5882639-5882724,5882916-5883017,
           5883375-5883597,5883693-5883758,5883896-5883986,
           5884019-5884057,5885401-5885548,5885623-5885715,
           5885782-5885886,5886645-5886826,5886912-5887084
          Length = 566

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
 Frame = -2

Query: 702 RLFKISMGNISVRQNSPKY---VFISANGITNPHYTKSSSFRINNSNLTS 562
           RL+K ++G+ S +  +P Y   V   A+G+ +PH+ +  +    +SNL S
Sbjct: 111 RLYKQTIGDNSAQPLTPDYTGSVLRYADGVFDPHFCRYVTIMEGSSNLNS 160


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,449,407
Number of Sequences: 37544
Number of extensions: 417827
Number of successful extensions: 740
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 723
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 740
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2350456800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)