Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30769
         (847 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z48583-4|CAN99691.1| 3394|Caenorhabditis elegans Hypothetical pr...    28   7.3  
Z48583-3|CAA88472.1| 3396|Caenorhabditis elegans Hypothetical pr...    28   7.3  
U40413-4|AAM51516.1|  699|Caenorhabditis elegans Hypothetical pr...    28   9.6  
U40413-3|AAK39176.1|  673|Caenorhabditis elegans Hypothetical pr...    28   9.6  

>Z48583-4|CAN99691.1| 3394|Caenorhabditis elegans Hypothetical protein
            F54B3.1b protein.
          Length = 3394

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 13/25 (52%), Positives = 14/25 (56%)
 Frame = -1

Query: 520  PYQFCREPSMHNRFFRMLTLPKPQD 446
            P QF REP   N FFRM   P  Q+
Sbjct: 2662 PPQFMREPQCSNIFFRMYRQPDLQE 2686


>Z48583-3|CAA88472.1| 3396|Caenorhabditis elegans Hypothetical protein
            F54B3.1a protein.
          Length = 3396

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 13/25 (52%), Positives = 14/25 (56%)
 Frame = -1

Query: 520  PYQFCREPSMHNRFFRMLTLPKPQD 446
            P QF REP   N FFRM   P  Q+
Sbjct: 2662 PPQFMREPQCSNIFFRMYRQPDLQE 2686


>U40413-4|AAM51516.1|  699|Caenorhabditis elegans Hypothetical
           protein C18B2.5b protein.
          Length = 699

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = +2

Query: 545 QNGVLRLVRFELFILKLEDLV*WGFVIPLAEIKTYLGLFCRTEILP 682
           ++G  RL    + +   E+ + W F+  LA++K   G   +T +LP
Sbjct: 558 KSGSFRLDAISIVLRHDENQLGWPFIYELADVKRMFGDDLKTNVLP 603


>U40413-3|AAK39176.1|  673|Caenorhabditis elegans Hypothetical
           protein C18B2.5a protein.
          Length = 673

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = +2

Query: 545 QNGVLRLVRFELFILKLEDLV*WGFVIPLAEIKTYLGLFCRTEILP 682
           ++G  RL    + +   E+ + W F+  LA++K   G   +T +LP
Sbjct: 532 KSGSFRLDAISIVLRHDENQLGWPFIYELADVKRMFGDDLKTNVLP 577


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,444,342
Number of Sequences: 27780
Number of extensions: 406099
Number of successful extensions: 849
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 829
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 849
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2098003600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)