Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30769
         (847 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g39980.1 68418.m04848 pentatricopeptide (PPR) repeat-containi...    30   2.2  
At3g31990.1 68416.m04051 hypothetical protein similar to putativ...    29   3.9  
At1g48990.1 68414.m05492 glycine-rich protein / oleosin contains...    29   5.1  

>At5g39980.1 68418.m04848 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 678

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = -2

Query: 258 IYNKFPFTTS*NGTVSNRKHSAYQRSQFIKKNENLFDNLCTIH 130
           ++ K P   + +   + RKH  YQRS F+  N ++ + L +IH
Sbjct: 58  VWRKQPEKNTTSSFQALRKHRRYQRSAFLDHNVDMDELLASIH 100


>At3g31990.1 68416.m04051 hypothetical protein similar to putative
           replication protein A1 GB:AAD32756 from [Arabidopsis
           thaliana]
          Length = 450

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 16/55 (29%), Positives = 29/55 (52%)
 Frame = -3

Query: 197 QPIKDHNSLKKMKTYLIISVRSIFIPNTYTLFWIEAFSVGPRQIRQKQHGTAMER 33
           QPI   + +K  KTY  + VR +    T+T+ + E F +    +R K+   +++R
Sbjct: 3   QPIAYLDDIKPYKTYWRVQVRVLHTWKTFTMQFGETFDMVLSDVRGKKIHASVKR 57


>At1g48990.1 68414.m05492 glycine-rich protein / oleosin contains
           Pfam profile: PF01277 oleosin
          Length = 169

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +2

Query: 392 GLLSKTRVLLVTGAEPSSILRFWKSQHPKES 484
           G LS   ++L TGA  S + R++K  HP  S
Sbjct: 103 GFLSLAGLILATGAVVSWLYRYFKGMHPLRS 133


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,039,146
Number of Sequences: 28952
Number of extensions: 366864
Number of successful extensions: 758
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 733
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 758
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1960634400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)