Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30767
(763 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC6B1.04 |mde4||monopolin-like complex subunit Mde4|Schizosacc... 32 0.078
SPBC947.12 |kms2||spindle pole body protein Kms2|Schizosaccharom... 32 0.10
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 31 0.14
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 31 0.18
SPAC1952.03 |||cysteine protease, OTU family|Schizosaccharomyces... 30 0.41
SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2 |S... 29 0.55
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo... 29 0.72
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 29 0.96
SPAC1002.04c |taf11||transcription factor TFIID complex subunit ... 29 0.96
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 29 0.96
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 28 1.3
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 28 1.7
SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su... 27 2.2
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ... 27 2.2
SPAC3C7.12 |tip1|noc1|CLIP170 family protein Tip1|Schizosaccharo... 27 2.2
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce... 27 3.9
SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|c... 27 3.9
SPCC162.06c |||vacuolar sorting protein Vps60|Schizosaccharomyce... 27 3.9
SPBC1718.02 |hop1||linear element associated protein Hop1|Schizo... 26 5.1
SPAC3A12.11c |cwf2|prp3|RNA-binding protein Cwf2|Schizosaccharom... 26 5.1
SPBC16A3.08c |||nuclear telomere cap complex subunit |Schizosacc... 26 5.1
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 26 5.1
SPBC365.11 |||GRIP domain protein|Schizosaccharomyces pombe|chr ... 26 6.7
SPBC887.17 |||uracil permease |Schizosaccharomyces pombe|chr 2||... 26 6.7
SPBC1709.02c |vas2|SPBC1734.18c|valine-tRNA ligase Vas2 |Schizos... 26 6.7
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo... 26 6.7
SPBC16G5.11c |bag101|bag1-a, bag1|BAG family molecular chaperone... 26 6.7
SPBC947.07 |||ribosome biogenesis protein Rrp14-C|Schizosaccharo... 26 6.7
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc... 25 8.9
SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces pom... 25 8.9
SPCC2H8.05c ||SPCC63.01c|sequence orphan|Schizosaccharomyces pom... 25 8.9
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 25 8.9
SPBC1347.04 |tim54||TIM22 inner membrane protein import complex ... 25 8.9
SPAC694.06c |mrc1||mediator of replication checkpoint 1 |Schizos... 25 8.9
>SPBC6B1.04 |mde4||monopolin-like complex subunit
Mde4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 421
Score = 32.3 bits (70), Expect = 0.078
Identities = 20/86 (23%), Positives = 43/86 (50%), Gaps = 3/86 (3%)
Frame = +1
Query: 40 KNKTTKMDAIKKKMQAMKLEKDNALDRAAMCEQQAKDAN---LRAEKAEEEARQLQKKIQ 210
K T + + K + +K ++ L+ + EQ+ +AN L+ E+ E + ++I
Sbjct: 54 KQSATDSELLHKNLDEIKFLQNEKLNNEKLLEQEQNEANDYRLKVERLEHKISDYVQEIN 113
Query: 211 TIENELDQTQESLMQLTESSKRRRRL 288
++ ++L Q Q+S + E + + RL
Sbjct: 114 SLNSQL-QIQKSNPEKHEDAVSQNRL 138
>SPBC947.12 |kms2||spindle pole body protein
Kms2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 457
Score = 31.9 bits (69), Expect = 0.10
Identities = 15/75 (20%), Positives = 38/75 (50%)
Frame = +1
Query: 40 KNKTTKMDAIKKKMQAMKLEKDNALDRAAMCEQQAKDANLRAEKAEEEARQLQKKIQTIE 219
++K ++ + + + E D++ + C QAK + +A ++++ ++QTI
Sbjct: 185 RSKDEQVKELNARNAKLLEELDSSEEACKSCYTQAKTWEKKFREALRDSKEYAAQLQTIH 244
Query: 220 NELDQTQESLMQLTE 264
E +Q Q ++++ E
Sbjct: 245 EEYEQQQAHIVRMEE 259
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 31.5 bits (68), Expect = 0.14
Identities = 32/124 (25%), Positives = 51/124 (41%), Gaps = 1/124 (0%)
Frame = +3
Query: 258 NGKLEEKEKALQNAESEVAALNRRIQXXXXXXXXXXXXXATATAKLSEASQAADESE-RI 434
N K E +E+A + AE + A + A AK +A E+E +
Sbjct: 560 NAKREAEEQAKREAEEK--AKREAEEKAKREAEEKAKREAEENAKREAEEKAKREAEEKA 617
Query: 435 RKALENRTNMEDDRVAILEAQLSQATSFAEESDKKYEEVARKLVLMEQDLERAEERAETK 614
++ E + E + A EA+ +A AEE K+ E K E AEE+A+ +
Sbjct: 618 KREAEEKAKREAEEKAKREAE-EKAKREAEEKAKREAEEKAKREAEENAKREAEEKAKRE 676
Query: 615 RLQN 626
+N
Sbjct: 677 AEEN 680
Score = 28.7 bits (61), Expect = 0.96
Identities = 31/111 (27%), Positives = 46/111 (41%), Gaps = 5/111 (4%)
Frame = +3
Query: 399 EASQAADE-----SERIRKALENRTNMEDDRVAILEAQLSQATSFAEESDKKYEEVARKL 563
EASQ D +RI++ E + + A LEA+ A AEE K+ E K
Sbjct: 521 EASQRKDAIKLAIQQRIQEKAEAEAKRKAEEKARLEAE-ENAKREAEEQAKREAEEKAKR 579
Query: 564 VLMEQDLERAEERAETKRLQNR*ALGGASVFVGNNLKSLEISEEKATKREE 716
E+ AEE+A+ + +N K+ +EEKA + E
Sbjct: 580 EAEEKAKREAEEKAKREAEENAKREAEEKAKREAEEKAKREAEEKAKREAE 630
Score = 28.7 bits (61), Expect = 0.96
Identities = 32/122 (26%), Positives = 49/122 (40%), Gaps = 3/122 (2%)
Frame = +3
Query: 270 EEKEKALQNA--ESEVAALNRRIQXXXXXXXXXXXXXATATAKLSEASQAADESER-IRK 440
E K KA + A E+E A + A AK +A E+E ++
Sbjct: 544 EAKRKAEEKARLEAEENAKREAEEQAKREAEEKAKREAEEKAKREAEEKAKREAEENAKR 603
Query: 441 ALENRTNMEDDRVAILEAQLSQATSFAEESDKKYEEVARKLVLMEQDLERAEERAETKRL 620
E + E + A EA+ +A AEE K+ E K E+ AEE+A+ +
Sbjct: 604 EAEEKAKREAEEKAKREAE-EKAKREAEEKAKREAEEKAKREAEEKAKREAEEKAKREAE 662
Query: 621 QN 626
+N
Sbjct: 663 EN 664
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 31.1 bits (67), Expect = 0.18
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = -2
Query: 600 VPPPSLGPAP*EQACAPPLRISCPTPRRMKLPVTVEP 490
+PPPS AP + APP+ S P P + PV P
Sbjct: 149 IPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPP 185
>SPAC1952.03 |||cysteine protease, OTU family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 324
Score = 29.9 bits (64), Expect = 0.41
Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Frame = +1
Query: 70 KKKMQAMKLEKDNALDRAAMCEQQAKDANLRAEKAE---EEARQLQKKIQTIENELDQ 234
++K ++ K+E+ + R E Q+K NLR + E ++ R LQ+KI +E +L Q
Sbjct: 17 QQKRKSKKMEELLSKQREECKELQSKITNLRKQLKEGNKKQKRALQQKISQMEADLSQ 74
>SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 316
Score = 29.5 bits (63), Expect = 0.55
Identities = 21/98 (21%), Positives = 48/98 (48%), Gaps = 2/98 (2%)
Frame = +1
Query: 31 GS*KNKTTKMDAIKKKMQAMKLEKDNALDRAAMCEQQAKDANLRAEKAEEEA--RQLQKK 204
G+ + + + ++ Q ++EK++ E+ +D + +E ++EEA ++L+++
Sbjct: 18 GNKMRELLEKEHLRMTQQNAEIEKEDEEYNIEEEEEAERDIEISSESSDEEAELKKLEEE 77
Query: 205 IQTIENELDQTQESLMQLTESSKRRRRLCRTLSPKWLP 318
+ +E L + +E + + R L RTL P P
Sbjct: 78 GEEVEKIL-RDEERIKKRKIQKNRAANLQRTLQPPKRP 114
>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
Ino80|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1604
Score = 29.1 bits (62), Expect = 0.72
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = -2
Query: 567 EQACAPPLRISCPTPRRMKLPVTVEPPRWQRDH 469
++A APP+ I CP R+ TV R+QRDH
Sbjct: 1341 QRASAPPIDIYCPGSRQF----TVLQSRFQRDH 1369
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 28.7 bits (61), Expect = 0.96
Identities = 18/77 (23%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Frame = +1
Query: 40 KNKTTKMDAIKKKMQAMKLEKDN-----ALDRAAMCEQQAKDANL--RAEKAEEEARQLQ 198
KN +++++ K K +++ E++ A R+++ + N+ + + +E R+L+
Sbjct: 590 KNLESELNSSKIKNESLLNERNLLKEMLATSRSSILSHNSSAGNIDDKMKSIDESTRELE 649
Query: 199 KKIQTIENELDQTQESL 249
K + NE+ QESL
Sbjct: 650 KNYEVYRNEMTAIQESL 666
>SPAC1002.04c |taf11||transcription factor TFIID complex subunit
Taf11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 199
Score = 28.7 bits (61), Expect = 0.96
Identities = 23/84 (27%), Positives = 35/84 (41%)
Frame = +3
Query: 375 ATATAKLSEASQAADESERIRKALENRTNMEDDRVAILEAQLSQATSFAEESDKKYEEVA 554
A + +E + ++ E E + EN EDDR A +S+ E+D + E
Sbjct: 33 ANTASPAAEPAPSSKEKENWNRQEENDLE-EDDRDDFGTAAISKVAGKPGETDDEANEKL 91
Query: 555 RKLVLMEQDLERAEERAETKRLQN 626
R L+E E +R E R N
Sbjct: 92 RTKYLLESFDEEQMQRYEVFRRAN 115
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 28.7 bits (61), Expect = 0.96
Identities = 18/79 (22%), Positives = 40/79 (50%), Gaps = 4/79 (5%)
Frame = +1
Query: 55 KMDAIKKKMQAMKLEKDNALDRAAMCEQQAKDANLRAEKAEEEARQLQKKIQTIENELDQ 234
K++ + ++ +KLE+ NA + KD + + + +EE + +I ++E ++D+
Sbjct: 3323 KLEPLNSEVDRLKLEQKNAEECIQETIAACKDLDEKLLQLQEEYASMISEIHSMELQMDE 3382
Query: 235 T----QESLMQLTESSKRR 279
Q S+ +T+ S R
Sbjct: 3383 VKCKMQRSIEVITDLSIER 3401
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 28.3 bits (60), Expect = 1.3
Identities = 18/51 (35%), Positives = 32/51 (62%), Gaps = 2/51 (3%)
Frame = +1
Query: 100 KDNALDRAAMCEQQAKDAN--LRAEKAEEEARQLQKKIQTIENELDQTQES 246
K ++L R A +Q+ + N L ++ AE EA +QK+I+++++ Q QES
Sbjct: 1425 KKSSLTRFAHLKQELTNKNKELTSKNAENEA--MQKEIESLKDSNHQLQES 1473
Score = 27.9 bits (59), Expect = 1.7
Identities = 16/71 (22%), Positives = 33/71 (46%)
Frame = +1
Query: 64 AIKKKMQAMKLEKDNALDRAAMCEQQAKDANLRAEKAEEEARQLQKKIQTIENELDQTQE 243
A+ ++ Q + A R E KD + E+E + L +++Q + +ELD +
Sbjct: 463 AMSEQYQKSLEDCQKAKSRYEQLETLFKDKCTENKHYEQETKDLARQVQVLLHELDLCEN 522
Query: 244 SLMQLTESSKR 276
++ +S K+
Sbjct: 523 GIVLGVDSRKK 533
Score = 27.5 bits (58), Expect = 2.2
Identities = 14/57 (24%), Positives = 29/57 (50%)
Frame = +1
Query: 94 LEKDNALDRAAMCEQQAKDANLRAEKAEEEARQLQKKIQTIENELDQTQESLMQLTE 264
LEKD + + QQ ++NLR + E +++K+ + + ++ S Q++E
Sbjct: 243 LEKDALQRKVSSLSQQFTESNLRYQNIVAELSEMRKQYEFSQVSFEKEISSQKQISE 299
Score = 26.6 bits (56), Expect = 3.9
Identities = 13/45 (28%), Positives = 26/45 (57%)
Frame = +1
Query: 133 EQQAKDANLRAEKAEEEARQLQKKIQTIENELDQTQESLMQLTES 267
EQQ +++ + ++ E L+ + + +ENEL Q +E L + + S
Sbjct: 63 EQQLRNSEKKLLQSNERYDLLEDERKLLENELSQIKEYLREKSSS 107
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 27.9 bits (59), Expect = 1.7
Identities = 16/69 (23%), Positives = 35/69 (50%)
Frame = +1
Query: 49 TTKMDAIKKKMQAMKLEKDNALDRAAMCEQQAKDANLRAEKAEEEARQLQKKIQTIENEL 228
T ++ ++ ++ ++ EKD+ + + +D + + E E RQLQ ++ + EL
Sbjct: 248 TERIRFLENALEKVQREKDS------LSTEMEEDKSNKEVDYEYEIRQLQNRLDELSEEL 301
Query: 229 DQTQESLMQ 255
D Q+ L +
Sbjct: 302 DVAQDLLTE 310
>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex subunit
Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1117
Score = 27.5 bits (58), Expect = 2.2
Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Frame = +3
Query: 474 RVAILEAQL-SQATSFAEESDKKYEEVARKLVLMEQ--DLERAEERAET 611
+V ILE++L S E ++KY E RKL L+E+ DL++ +A +
Sbjct: 870 KVNILESRLLSNPLHNFSELEEKYAEYLRKLALLEEVKDLKKKLSKARS 918
>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1044
Score = 27.5 bits (58), Expect = 2.2
Identities = 14/68 (20%), Positives = 32/68 (47%)
Frame = +1
Query: 61 DAIKKKMQAMKLEKDNALDRAAMCEQQAKDANLRAEKAEEEARQLQKKIQTIENELDQTQ 240
+A+ ++ ++++ + + ++ AEK EE Q+K+ + ELD T+
Sbjct: 620 EALDLSVKERSIQEEKLNESLKTSKTNLEEQTQLAEKYHEELLDNQQKLYDLRIELDYTK 679
Query: 241 ESLMQLTE 264
+ Q+ E
Sbjct: 680 SNCKQMEE 687
>SPAC3C7.12 |tip1|noc1|CLIP170 family protein
Tip1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 461
Score = 27.5 bits (58), Expect = 2.2
Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
Frame = +3
Query: 396 SEASQAADESERIRKALENRTNME----DDRVAILEAQLSQATSFAEESDKKYEEVARKL 563
+EASQ E + + LE +N ++R+A LEAQL S E D + +
Sbjct: 199 NEASQRRFEFKTTIECLEESSNRAIETYENRIAELEAQLEMYMSGKSEDDLLFSLQQERD 258
Query: 564 VLMEQDLERAEERAET 611
+ Q +E +ER +T
Sbjct: 259 YALNQ-VEILQERVDT 273
>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1008
Score = 26.6 bits (56), Expect = 3.9
Identities = 27/117 (23%), Positives = 55/117 (47%), Gaps = 10/117 (8%)
Frame = +3
Query: 231 PDTGVSHAVNGK-LEEKEKALQNAESEVAALNRRIQXXXXXXXXXXXXXATATAKLSEAS 407
P + + + VN + ++ + +NAE E RR+Q + T +SE +
Sbjct: 90 PASKMRNTVNLQHIQAANQKTRNAEGERKVAQRRVQSDKAEANDAAMSSSAPTVDVSEGN 149
Query: 408 QAA------DESE--RIRKALENRTNMEDDRVAILEAQLS-QATSFAEESDKKYEEV 551
AA D+S+ R+ + ++ N+ D+ A +++L+ + ES+K+ E+V
Sbjct: 150 SAAEPKITPDDSDTPRLNVDMNDKINV-DEAAAKSDSKLNVDQINSTTESEKRVEKV 205
>SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 26.6 bits (56), Expect = 3.9
Identities = 11/41 (26%), Positives = 23/41 (56%)
Frame = +1
Query: 163 AEKAEEEARQLQKKIQTIENELDQTQESLMQLTESSKRRRR 285
A + + +L+KK + +E + T +S ++ + SK+R R
Sbjct: 338 ASQVRKPVGKLEKKFENLEKSIGDTLKSSIRSSPKSKKRSR 378
>SPCC162.06c |||vacuolar sorting protein Vps60|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 210
Score = 26.6 bits (56), Expect = 3.9
Identities = 13/68 (19%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Frame = +1
Query: 70 KKKMQAMKLEKDNALDRAAMCEQQAKDANLRAEKAEEEARQLQKKIQTIENE-LDQTQES 246
+ ++Q ++ + N +++AAM + K+ + +E ARQL+ + + + E +++ Q+
Sbjct: 76 ESQLQQLQQQSFN-MEQAAMTTESLKNTMATVQTMQETARQLKSQSKNVSIEKIEKLQDE 134
Query: 247 LMQLTESS 270
+ +++
Sbjct: 135 IQDYMDAA 142
>SPBC1718.02 |hop1||linear element associated protein
Hop1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 528
Score = 26.2 bits (55), Expect = 5.1
Identities = 9/30 (30%), Positives = 20/30 (66%)
Frame = +3
Query: 537 KYEEVARKLVLMEQDLERAEERAETKRLQN 626
KY+E+ +L EQ +E++ + + +++QN
Sbjct: 263 KYDEIGSTQILDEQSVEKSLSQGKCEKMQN 292
>SPAC3A12.11c |cwf2|prp3|RNA-binding protein
Cwf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 26.2 bits (55), Expect = 5.1
Identities = 10/30 (33%), Positives = 20/30 (66%)
Frame = +3
Query: 525 ESDKKYEEVARKLVLMEQDLERAEERAETK 614
E K+YEE RK+ ++++ + A ++ ET+
Sbjct: 28 EKSKEYEETPRKVKIVKRKKQPARKQIETR 57
>SPBC16A3.08c |||nuclear telomere cap complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 284
Score = 26.2 bits (55), Expect = 5.1
Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Frame = +3
Query: 393 LSEASQAADESERIRKALENRTNME----DDRVAILEAQLSQATSFAEESDKK 539
LSE AA R + LEN T +E ++ A L+ SQ S A+ES K
Sbjct: 181 LSERKSAAKPVGRTVEKLENATKVEKSAPEELFASLKKSASQKKSAAKESKPK 233
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 26.2 bits (55), Expect = 5.1
Identities = 13/76 (17%), Positives = 33/76 (43%)
Frame = +1
Query: 46 KTTKMDAIKKKMQAMKLEKDNALDRAAMCEQQAKDANLRAEKAEEEARQLQKKIQTIENE 225
+ ++ D +K + + ++ + KD+ + EEE +L++ +TI ++
Sbjct: 327 RISEFDNLKSERDTLSIKNEKLEKLLRNTIGSLKDSRTSNSQLEEEMVELKESNRTIHSQ 386
Query: 226 LDQTQESLMQLTESSK 273
L + L + +K
Sbjct: 387 LTDAESKLSSFEQENK 402
Score = 25.8 bits (54), Expect = 6.7
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = +1
Query: 133 EQQAKDANLRAEKAEEEARQLQKKIQTIENELDQTQESLMQL 258
EQ + +K E ++L+ QTI +L T L QL
Sbjct: 601 EQNFSSLDTSFKKLNESHQELENNHQTITKQLKDTSSKLQQL 642
>SPBC365.11 |||GRIP domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 266
Score = 25.8 bits (54), Expect = 6.7
Identities = 13/57 (22%), Positives = 29/57 (50%)
Frame = +1
Query: 52 TKMDAIKKKMQAMKLEKDNALDRAAMCEQQAKDANLRAEKAEEEARQLQKKIQTIEN 222
TK A KKK + K +K+N + ++ + ++++ + L +K++ +EN
Sbjct: 32 TKPPASKKKRKNRKKKKNNGPSEQFVGNNDLEEQRSGSIDSKDKEKPLDEKVKELEN 88
Score = 25.8 bits (54), Expect = 6.7
Identities = 22/103 (21%), Positives = 42/103 (40%)
Frame = +3
Query: 267 LEEKEKALQNAESEVAALNRRIQXXXXXXXXXXXXXATATAKLSEASQAADESERIRKAL 446
L+EK K L+NA ++ L RRIQ L+ + D +R+ K+
Sbjct: 79 LDEKVKELENANKTLSDLVRRIQIQRDEAEQKAEIYNRDA--LNTKQEHLDIKKRLEKSD 136
Query: 447 ENRTNMEDDRVAILEAQLSQATSFAEESDKKYEEVARKLVLME 575
E ++++ + + + E D+ E + ++ V E
Sbjct: 137 ETVCKLKEENENLQDMLRNVGNELVESRDEIKELIEKQKVQKE 179
>SPBC887.17 |||uracil permease |Schizosaccharomyces pombe|chr
2|||Manual
Length = 625
Score = 25.8 bits (54), Expect = 6.7
Identities = 19/63 (30%), Positives = 32/63 (50%)
Frame = +3
Query: 468 DDRVAILEAQLSQATSFAEESDKKYEEVARKLVLMEQDLERAEERAETKRLQNR*ALGGA 647
DDR A+ A L ATS + D K E+ + V M+ E + ++ + +R+ A+G +
Sbjct: 544 DDRKAMDNATLEMATSRSYSEDGKNEKTTHEDVTMK---ETSLKKMDDERISVDEAVGES 600
Query: 648 SVF 656
F
Sbjct: 601 ESF 603
>SPBC1709.02c |vas2|SPBC1734.18c|valine-tRNA ligase Vas2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 980
Score = 25.8 bits (54), Expect = 6.7
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Frame = +1
Query: 91 KLEKDNALDRAAMCEQQAKDANLRAEKAEEEAR--QLQKK 204
K EK+ +R + + A L A+KA+EEAR +L KK
Sbjct: 25 KTEKELERERQKAAKLEKYHAKLAAKKAKEEARKPKLDKK 64
>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1065
Score = 25.8 bits (54), Expect = 6.7
Identities = 27/127 (21%), Positives = 55/127 (43%), Gaps = 6/127 (4%)
Frame = +3
Query: 387 AKLSEASQAADESERIRKALENRTNMEDDRVAILEAQLSQATSFAEESDKKYEEVARKLV 566
A+ S ++ +E + K NRT + + + + EAQ S + + + + + L
Sbjct: 301 ARASFSNFMENEKKLYEKVNTNRTLLRNANLTLNEAQQSVKSLTERQGPRPSDNGVQDLQ 360
Query: 567 LMEQDLERAEERAETKRLQNR*ALGGASVFVGNNLKSLE-ISEE-----KATKREETYET 728
Q++ + + E ++L++ LG L L+ I E ATKR+ + +
Sbjct: 361 EKMQEVNAEKLQHENEKLESSHELGSIRTLKAQKLIDLDNIKRELSYYNDATKRKLDFMS 420
Query: 729 SSLNYLD 749
S+ + D
Sbjct: 421 SAPGWED 427
>SPBC16G5.11c |bag101|bag1-a, bag1|BAG family molecular chaperone
regulator|Schizosaccharomyces pombe|chr 2|||Manual
Length = 195
Score = 25.8 bits (54), Expect = 6.7
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +1
Query: 157 LRAEKAEEEARQLQKKIQTIENELDQTQESL 249
L +EK E +QL KIQ + + +DQT + +
Sbjct: 163 LGSEKLRFERKQLVSKIQKMLDHVDQTSQEV 193
>SPBC947.07 |||ribosome biogenesis protein
Rrp14-C|Schizosaccharomyces pombe|chr 2|||Manual
Length = 233
Score = 25.8 bits (54), Expect = 6.7
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = +1
Query: 70 KKKMQAMKLEKDNALDRAAMCEQQAKDANLRAEKAEEEARQ 192
KK A K KDN +A + QQ ++ NL+ + +++++
Sbjct: 181 KKSSDAWKERKDNE-KKAMLMRQQRREENLKKRRESKKSKK 220
>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 25.4 bits (53), Expect = 8.9
Identities = 15/76 (19%), Positives = 31/76 (40%)
Frame = +1
Query: 43 NKTTKMDAIKKKMQAMKLEKDNALDRAAMCEQQAKDANLRAEKAEEEARQLQKKIQTIEN 222
N T K + + K D ++ +C++QA+ + + QLQ ++ +
Sbjct: 452 NATRKKNGVYLAESTYKELMDRVQNKDLLCQEQARKLEVLDLNVKSSREQLQYVSKSNQE 511
Query: 223 ELDQTQESLMQLTESS 270
+ + +QL SS
Sbjct: 512 HKKEVEALQLQLVNSS 527
>SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 649
Score = 25.4 bits (53), Expect = 8.9
Identities = 28/124 (22%), Positives = 51/124 (41%), Gaps = 2/124 (1%)
Frame = +3
Query: 384 TAKLSEASQAADESERIRKALENRTNMEDDRVAILEAQ--LSQATSFAEESDKKYEEVAR 557
TA L E D E ++ L+N++ + AIL + L + S ++ ++ + +
Sbjct: 261 TASLEEYLNDPDFEENRKQYLQNKSGSPVEETAILNRKPTLRKKKSIPKKQNESSSTI-Q 319
Query: 558 KLVLMEQDLERAEERAETKRLQNR*ALGGASVFVGNNLKSLEISEEKATKREETYETSSL 737
K ++Q+ +EE A K L +K E+ E+ + EE S
Sbjct: 320 KENTVQQEASSSEEEA-VKSLPETQRTTSRIETQEEEIKEEEMEGEEEEEEEEVPNYESE 378
Query: 738 NYLD 749
N L+
Sbjct: 379 NELE 382
>SPCC2H8.05c ||SPCC63.01c|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 217
Score = 25.4 bits (53), Expect = 8.9
Identities = 16/65 (24%), Positives = 30/65 (46%)
Frame = +3
Query: 429 RIRKALENRTNMEDDRVAILEAQLSQATSFAEESDKKYEEVARKLVLMEQDLERAEERAE 608
R+R+ E +T+ EDD + ++S S + ++ L +E D+E E +
Sbjct: 130 RVREEQEEKTDNEDDN----DVEISTQESLENNGLAEKKDDTSSLATLEDDIEGQEFSFD 185
Query: 609 TKRLQ 623
+ LQ
Sbjct: 186 DQDLQ 190
>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
Rad50|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1290
Score = 25.4 bits (53), Expect = 8.9
Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 9/78 (11%)
Frame = +3
Query: 447 ENRTNMED---DRVAILEAQLSQATSFAEESDKKYEEVARKLV------LMEQDLERAEE 599
EN+TN +++ L++ S+ S+ + D Y E KLV L E++ +
Sbjct: 532 ENKTNKSAILANQLMTLKSSFSEVMSYELKDDDNYNEELDKLVEDVRKKLQEKEEAESSL 591
Query: 600 RAETKRLQNR*ALGGASV 653
R+ +RL+ R +L S+
Sbjct: 592 RSVRERLEIRISLSVQSI 609
>SPBC1347.04 |tim54||TIM22 inner membrane protein import complex
subunit Tim54|Schizosaccharomyces pombe|chr 2|||Manual
Length = 347
Score = 25.4 bits (53), Expect = 8.9
Identities = 19/67 (28%), Positives = 35/67 (52%)
Frame = +1
Query: 61 DAIKKKMQAMKLEKDNALDRAAMCEQQAKDANLRAEKAEEEARQLQKKIQTIENELDQTQ 240
D +K+K++ KLE +N ++ E++ KD + +K + + KKI +NE+D +
Sbjct: 168 DIMKRKLETEKLEANNKEEKE---EKEGKDD--KDDKEDSNDTKNDKKIS--KNEVDSSL 220
Query: 241 ESLMQLT 261
LT
Sbjct: 221 IEASPLT 227
>SPAC694.06c |mrc1||mediator of replication checkpoint 1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1019
Score = 25.4 bits (53), Expect = 8.9
Identities = 17/83 (20%), Positives = 38/83 (45%)
Frame = +3
Query: 381 ATAKLSEASQAADESERIRKALENRTNMEDDRVAILEAQLSQATSFAEESDKKYEEVARK 560
A+ + +S A E+ +++ + +R E L T+F D YE V R
Sbjct: 42 ASVDMQLSSNAVSEASLDKESTVGNLENQKNRSYSSEIYLHSDTNFLSNFDSAYERVRR- 100
Query: 561 LVLMEQDLERAEERAETKRLQNR 629
+L +Q + + ++ E ++++ +
Sbjct: 101 -LLNQQGGKSSLQKKEVEQIETQ 122
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,449,876
Number of Sequences: 5004
Number of extensions: 45108
Number of successful extensions: 280
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 244
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 280
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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