Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30767
         (763 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    25   0.58 
X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor pro...    25   1.0  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   7.1  

>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 25.4 bits (53), Expect = 0.58
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
 Frame = +3

Query: 438 KALENRTNMEDDRVAILEAQLS---QATSFAEESDKKYEEVARKLVLMEQDLERAEERAE 608
           K L N  N  D R    E +L    +A    +E +++YE++ RK++L E +L        
Sbjct: 16  KQLRNEDNKIDLRSRTKEERLQYRREAWLVQQEREQEYEKLKRKMIL-EYELYIKYSHTH 74

Query: 609 TKRL 620
            K+L
Sbjct: 75  EKKL 78


>X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor
           protein.
          Length = 283

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 26/100 (26%), Positives = 38/100 (38%), Gaps = 6/100 (6%)
 Frame = -2

Query: 549 PLRISCPTPRRMKLPVTVEPPRWQRDHPPCWCGSPAP-----CVFARIHRRPGWPRTAWR 385
           P+ IS P P   +L    EP     ++ P +   P P        A +   PG  R  + 
Sbjct: 102 PVYISQPRPPHPRLRREAEPEAEPGNNRPVYIPQPRPPHPRLRREAELEAEPGNNRPVYI 161

Query: 384 WRSRDA-PRTSRGPPPAVGYVGSGQPLRTQRSAEPSPSLR 268
            + R   PR  R   P     G+ +P+   +   P P LR
Sbjct: 162 SQPRPPHPRLRREAEPE-AEPGNNRPVYIPQPRPPHPRLR 200


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 9/51 (17%), Positives = 24/51 (47%)
 Frame = +3

Query: 447 ENRTNMEDDRVAILEAQLSQATSFAEESDKKYEEVARKLVLMEQDLERAEE 599
           + RT    DRV  LEA+    +   ++  +  + +   L ++++ ++   +
Sbjct: 338 DRRTRHLSDRVVALEAEKKNLSKVIDQHSQLIDTLENVLAIVDRLMDETNQ 388


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,952
Number of Sequences: 438
Number of extensions: 4228
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23789892
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)