Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30766
         (829 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx mori|...    37   0.54 
UniRef50_Q4SA67 Cluster: P2X purinoceptor; n=2; Tetraodontidae|R...    34   3.8  

>UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx
           mori|Rep: NADPH oxidoreductase - Bombyx mori (Silk moth)
          Length = 191

 Score = 37.1 bits (82), Expect = 0.54
 Identities = 20/39 (51%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
 Frame = -3

Query: 116 YPDKILISQFLQSVIKICMF-FLLLR*LDELTPHLVLSG 3
           Y +K + SQ   +  + C+  FLLLR +DELT HLVLSG
Sbjct: 133 YEEKTVCSQINANPKRFCLSRFLLLRWVDELTAHLVLSG 171


>UniRef50_Q4SA67 Cluster: P2X purinoceptor; n=2; Tetraodontidae|Rep:
           P2X purinoceptor - Tetraodon nigroviridis (Green puffer)
          Length = 453

 Score = 34.3 bits (75), Expect = 3.8
 Identities = 19/65 (29%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
 Frame = -1

Query: 781 LKLNSKLPGNSVL---ENFQIVVEILTRFTSGNFQ*YIYV*PFKSKLPTVS*NYIRRCTR 611
           L+++S+LP +++L   ENF ++++    +   NF   +   P ++ LP V  +Y+R C  
Sbjct: 248 LEISSRLPESALLAAAENFTVLIKNSITYPKFNFHSPLCSCPQRNILPHVESSYLRSCEY 307

Query: 610 TTHSD 596
            T +D
Sbjct: 308 NTETD 312


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 731,901,942
Number of Sequences: 1657284
Number of extensions: 13114112
Number of successful extensions: 24178
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 23436
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24172
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 71734006925
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)