Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30766
         (829 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC70.04c |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    29   1.1  
SPBC8D2.13 |||SHQ1 family protein|Schizosaccharomyces pombe|chr ...    27   3.2  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        26   5.7  
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc...    25   9.9  

>SPCC70.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 244

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 11/26 (42%), Positives = 20/26 (76%)
 Frame = -2

Query: 693 ISNNIFMYNPLSQSCQLSVKITLGGA 616
           + +++F+Y+PLS+S QL  K+ L G+
Sbjct: 203 VFSSLFLYHPLSRSRQLPTKMQLDGS 228


>SPBC8D2.13 |||SHQ1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 451

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 11/51 (21%), Positives = 28/51 (54%)
 Frame = +1

Query: 4   PLNTRWGVSSSNYLSNKKNIHILITD*RNWLINILSGYKNIF*IHSIFNVF 156
           PL   W ++    L+  K+ H +++  + W++ +L   +N+F  H ++ ++
Sbjct: 341 PLYRNWDLA----LTCWKDTHAILSLGKRWILRVLLRIRNLFEHHDVYYIY 387


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -1

Query: 772  NSKLPGNSVLENFQIVVEILTRFTSGNFQ 686
            NSK    ++ E+  I+V+ +T  T G FQ
Sbjct: 3265 NSKFTKQNLCESASIIVQFITDLTVGEFQ 3293


>SPAC6G9.04 |mug79||meiotically upregulated gene
           Mug79|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
 Frame = +1

Query: 25  VSSSNYLSNKKNIHILITD*RNWLINILSGYKNIF-*IHSIFNVFALSIY*YVRQKLCIP 201
           ++ SN L N     +L  +  +W  ++ S Y+N++    S ++  +L++Y    QKLC  
Sbjct: 738 INLSNCLRNLLEKQLLSYNFTDWFASLGSEYENVYVKFISHYDFSSLNVY-ASFQKLCCD 796

Query: 202 FYENCAD 222
            Y    D
Sbjct: 797 LYYGSDD 803


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,159,991
Number of Sequences: 5004
Number of extensions: 60031
Number of successful extensions: 117
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)