Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30766
         (829 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC084197-35|AAN63424.1|  505|Caenorhabditis elegans Puf (pumilio...    28   7.1  
Z82260-1|CAB05140.1|  332|Caenorhabditis elegans Hypothetical pr...    28   9.4  
Z81516-7|CAB04207.1| 1377|Caenorhabditis elegans Hypothetical pr...    28   9.4  
Z81467-6|CAB03874.1| 1377|Caenorhabditis elegans Hypothetical pr...    28   9.4  
AL021488-1|CAB63369.1|  502|Caenorhabditis elegans Hypothetical ...    28   9.4  

>AC084197-35|AAN63424.1|  505|Caenorhabditis elegans Puf
           (pumilio/fbf) domain-containingprotein 11 protein.
          Length = 505

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
 Frame = +2

Query: 119 KIFFKFIQYSTFLLYLYINT*GKNFVSLFTKIARTEEYEIF--HIYRDIEKKC 271
           K+F K ++     L L  N  G  FV    + + TEE EI   H+  D+   C
Sbjct: 177 KLFRKLVEDRAIFLSLCCNMFGNFFVQRVLECSNTEEQEILTEHLASDLYNLC 229


>Z82260-1|CAB05140.1|  332|Caenorhabditis elegans Hypothetical
           protein C32H11.2 protein.
          Length = 332

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = +3

Query: 102 YFVRIQKYFLNSFNIQRFCFIYILIREAKTLYPFLRKLRGR 224
           Y++    ++L SF   R CF+Y      +T++P L +   R
Sbjct: 114 YYITQVLHYLISFLAIRKCFVYFFPSTERTIFPILGRFYKR 154


>Z81516-7|CAB04207.1| 1377|Caenorhabditis elegans Hypothetical protein
            F26H9.8 protein.
          Length = 1377

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = +1

Query: 733  GSFQGRNYRGVWNLILRSGH 792
            G FQ +   GVWNL LR+GH
Sbjct: 1002 GYFQLKAEPGVWNLHLRNGH 1021


>Z81467-6|CAB03874.1| 1377|Caenorhabditis elegans Hypothetical protein
            F26H9.8 protein.
          Length = 1377

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = +1

Query: 733  GSFQGRNYRGVWNLILRSGH 792
            G FQ +   GVWNL LR+GH
Sbjct: 1002 GYFQLKAEPGVWNLHLRNGH 1021


>AL021488-1|CAB63369.1|  502|Caenorhabditis elegans Hypothetical
           protein Y45F10A.2 protein.
          Length = 502

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
 Frame = +2

Query: 119 KIFFKFIQYSTFLLYLYINT*GKNFVSLFTKIARTEEYEIF--HIYRDIEKKC 271
           K+F K ++     L L  N  G  FV    + + TEE EI   H+  D+   C
Sbjct: 174 KLFRKLVEDRAIFLSLCSNMFGNFFVQRVLECSNTEEQEILTEHLATDLYNLC 226


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,394,259
Number of Sequences: 27780
Number of extensions: 331009
Number of successful extensions: 630
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 630
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2050970610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)