Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30766
         (829 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g79380.1 68414.m09251 copine-related low similarity to SP|Q99...    29   5.0  
At5g22250.1 68418.m02591 CCR4-NOT transcription complex protein,...    28   8.7  

>At1g79380.1 68414.m09251 copine-related low similarity to SP|Q99829
           Copine I {Homo sapiens}
          Length = 401

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = -1

Query: 814 IGKGPGPYAQTLKLNSKLPGNSVLENFQIV--VEILTR 707
           +G G GP+    K + K+P     +NFQ V   EI+TR
Sbjct: 247 VGVGDGPWEDMRKFDDKIPKRE-FDNFQFVNFTEIMTR 283


>At5g22250.1 68418.m02591 CCR4-NOT transcription complex protein,
           putative similar to SWISS-PROT:Q60809 CCR4-NOT
           transcription complex, subunit 7 (CCR4-associated factor
           1, (CAF1) [Mus musculus]
          Length = 278

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -3

Query: 737 LPDCGGDSNAFYIWKF 690
           LPD GG  N  YIW+F
Sbjct: 92  LPDLGGQKNRRYIWEF 107


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,807,838
Number of Sequences: 28952
Number of extensions: 285599
Number of successful extensions: 434
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 432
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 434
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1902108000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)