Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30765
(464 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g27710.3 68415.m03359 60S acidic ribosomal protein P2 (RPP2B) 87 6e-18
At2g27710.2 68415.m03358 60S acidic ribosomal protein P2 (RPP2B) 87 6e-18
At2g27710.1 68415.m03357 60S acidic ribosomal protein P2 (RPP2B) 87 6e-18
At2g27720.1 68415.m03360 60S acidic ribosomal protein P2 (RPP2A) 83 7e-17
At3g44590.2 68416.m04793 60S acidic ribosomal protein P2 (RPP2D)... 83 9e-17
At3g44590.1 68416.m04792 60S acidic ribosomal protein P2 (RPP2D)... 83 9e-17
At5g40040.1 68418.m04856 60S acidic ribosomal protein P2 (RPP2E)... 75 3e-14
At3g28500.1 68416.m03560 60S acidic ribosomal protein P2 (RPP2C)... 71 5e-13
At3g63200.1 68416.m07100 patatin-related low similarity to patat... 31 0.51
At1g67140.1 68414.m07638 expressed protein 29 2.0
At4g29880.1 68417.m04252 leucine-rich repeat family protein cont... 27 6.2
At2g24020.1 68415.m02869 expressed protein contains Pfam domain ... 27 6.2
At4g31210.1 68417.m04432 DNA topoisomerase family protein simila... 27 8.3
At4g13370.1 68417.m02090 expressed protein 27 8.3
At2g45000.1 68415.m05603 expressed protein contains Pfam profile... 27 8.3
At1g69550.1 68414.m07998 disease resistance protein (TIR-NBS cla... 27 8.3
>At2g27710.3 68415.m03359 60S acidic ribosomal protein P2 (RPP2B)
Length = 115
Score = 87.0 bits (206), Expect = 6e-18
Identities = 40/74 (54%), Positives = 56/74 (75%)
Frame = +1
Query: 34 MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAGRE 213
M+ VAAYLLAVL GK +P +AD++ IL SVG E + +++ ++ E+ GKD+ +LIAAGRE
Sbjct: 1 MKVVAAYLLAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60
Query: 214 KLSSMPVGGGAPAA 255
KL+S+P GGG A
Sbjct: 61 KLASVPSGGGGGVA 74
>At2g27710.2 68415.m03358 60S acidic ribosomal protein P2 (RPP2B)
Length = 115
Score = 87.0 bits (206), Expect = 6e-18
Identities = 40/74 (54%), Positives = 56/74 (75%)
Frame = +1
Query: 34 MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAGRE 213
M+ VAAYLLAVL GK +P +AD++ IL SVG E + +++ ++ E+ GKD+ +LIAAGRE
Sbjct: 1 MKVVAAYLLAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60
Query: 214 KLSSMPVGGGAPAA 255
KL+S+P GGG A
Sbjct: 61 KLASVPSGGGGGVA 74
>At2g27710.1 68415.m03357 60S acidic ribosomal protein P2 (RPP2B)
Length = 115
Score = 87.0 bits (206), Expect = 6e-18
Identities = 40/74 (54%), Positives = 56/74 (75%)
Frame = +1
Query: 34 MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAGRE 213
M+ VAAYLLAVL GK +P +AD++ IL SVG E + +++ ++ E+ GKD+ +LIAAGRE
Sbjct: 1 MKVVAAYLLAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60
Query: 214 KLSSMPVGGGAPAA 255
KL+S+P GGG A
Sbjct: 61 KLASVPSGGGGGVA 74
>At2g27720.1 68415.m03360 60S acidic ribosomal protein P2 (RPP2A)
Length = 115
Score = 83.4 bits (197), Expect = 7e-17
Identities = 38/74 (51%), Positives = 54/74 (72%)
Frame = +1
Query: 34 MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAGRE 213
M+ VAA+LLAVL GK +P D++ IL SVG E + +++ ++ E+ GKD+ +LIAAGRE
Sbjct: 1 MKVVAAFLLAVLSGKASPTTGDIKDILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60
Query: 214 KLSSMPVGGGAPAA 255
KL+S+P GGG A
Sbjct: 61 KLASVPSGGGGGVA 74
>At3g44590.2 68416.m04793 60S acidic ribosomal protein P2 (RPP2D)
acidic ribosomal protein P2, maize, PIR:S54179
Length = 111
Score = 83.0 bits (196), Expect = 9e-17
Identities = 35/70 (50%), Positives = 55/70 (78%)
Frame = +1
Query: 34 MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAGRE 213
M+ AA+LLAVLGG P+A +++ I+ +VG + DGE ++ ++ E++GKD+ +LIA+GRE
Sbjct: 1 MKVAAAFLLAVLGGNANPSADNIKDIIGAVGADVDGESIELLLKEVSGKDIAELIASGRE 60
Query: 214 KLSSMPVGGG 243
KL+S+P GGG
Sbjct: 61 KLASVPSGGG 70
>At3g44590.1 68416.m04792 60S acidic ribosomal protein P2 (RPP2D)
acidic ribosomal protein P2, maize, PIR:S54179
Length = 111
Score = 83.0 bits (196), Expect = 9e-17
Identities = 35/70 (50%), Positives = 55/70 (78%)
Frame = +1
Query: 34 MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAGRE 213
M+ AA+LLAVLGG P+A +++ I+ +VG + DGE ++ ++ E++GKD+ +LIA+GRE
Sbjct: 1 MKVAAAFLLAVLGGNANPSADNIKDIIGAVGADVDGESIELLLKEVSGKDIAELIASGRE 60
Query: 214 KLSSMPVGGG 243
KL+S+P GGG
Sbjct: 61 KLASVPSGGG 70
>At5g40040.1 68418.m04856 60S acidic ribosomal protein P2 (RPP2E)
acidic ribosomal protein P2, Parthenium
argentatum,SWISSPROT:RLA2_PARAR
Length = 114
Score = 74.5 bits (175), Expect = 3e-14
Identities = 36/73 (49%), Positives = 50/73 (68%)
Frame = +1
Query: 34 MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAGRE 213
M+ VAAYLLA L G P+ AD++KI+ SVG E D EK+ + + +DV +LIA GRE
Sbjct: 1 MKVVAAYLLAKLSGNENPSVADLKKIVESVGAEIDQEKIDLFFSLIKDRDVTELIAVGRE 60
Query: 214 KLSSMPVGGGAPA 252
K++++ GGGA A
Sbjct: 61 KMAALSSGGGAVA 73
>At3g28500.1 68416.m03560 60S acidic ribosomal protein P2 (RPP2C)
similar to acidic ribosomal protein P2b (rpp2b)
GB:U62753 GI:2431770 from [Zea mays]
Length = 115
Score = 70.5 bits (165), Expect = 5e-13
Identities = 35/73 (47%), Positives = 49/73 (67%)
Frame = +1
Query: 34 MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAGRE 213
M+ +AA+LLA LGG P + D++KIL SVG E D K+ + + + DV +LIAAGRE
Sbjct: 1 MKVIAAFLLAKLGGNENPTSNDLKKILESVGAEIDETKIDLLFSLIKDHDVTELIAAGRE 60
Query: 214 KLSSMPVGGGAPA 252
K+S++ GG A A
Sbjct: 61 KMSALSSGGPAVA 73
>At3g63200.1 68416.m07100 patatin-related low similarity to
patatin-like latex protein allergen Hev b 7 - Hevea
brasiliensis, EMBL:AF113546; contains patatin domain
PF01734
Length = 384
Score = 30.7 bits (66), Expect = 0.51
Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 4/47 (8%)
Frame = +1
Query: 103 EKILSSVGIEADGEKLKKVITELNGKDVE----QLIAAGREKLSSMP 231
E++L G+E +K+++TE NG+ +E +L+A+G+ L P
Sbjct: 325 EELLKERGVETAPFGVKRILTESNGERIEGFVQRLVASGKSSLPPSP 371
>At1g67140.1 68414.m07638 expressed protein
Length = 2158
Score = 28.7 bits (61), Expect = 2.0
Identities = 15/42 (35%), Positives = 25/42 (59%)
Frame = -3
Query: 219 QLLTSGRNKLFNILAVELSDYFLKLLTVSFDTDGAEDLLNVS 94
Q L++GR L+++L L++L+ SF D + D+L VS
Sbjct: 1403 QSLSAGRFFSSGFLSIDLCQELLQVLSYSFHMDSSWDILAVS 1444
>At4g29880.1 68417.m04252 leucine-rich repeat family protein
contains leucine rich repeats, Pfam:PF00560
Length = 404
Score = 27.1 bits (57), Expect = 6.2
Identities = 19/70 (27%), Positives = 33/70 (47%)
Frame = -3
Query: 228 H*RQLLTSGRNKLFNILAVELSDYFLKLLTVSFDTDGAEDLLNVSGSWRGLATQHSQ*IR 49
H +++ S +L N++A+++ +K L S +LNVSG++ Q Q R
Sbjct: 87 HIKKIPESLTARLLNLIALDIHSNQIKALPNSIGCLSKLKILNVSGNFLVSLPQTIQNCR 146
Query: 48 GHVTHFLSPN 19
H + PN
Sbjct: 147 FHTSTKSGPN 156
>At2g24020.1 68415.m02869 expressed protein contains Pfam domain
PF02575: Uncharacterized BCR, YbaB family COG0718
Length = 182
Score = 27.1 bits (57), Expect = 6.2
Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Frame = +1
Query: 40 YVAAYLLAV-LGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAGREK 216
Y A L+ V L G P D+ + +E EKL +++TE + + A +E+
Sbjct: 108 YCAGELVKVTLSGNQQPIRTDI----TEAAMELGSEKLSQLVTEAYKDAHAKSVVAMKER 163
Query: 217 LSSMPVGGGAP 249
+S + G P
Sbjct: 164 MSDLAQSLGMP 174
>At4g31210.1 68417.m04432 DNA topoisomerase family protein similar to
DNA Topoisomerase I (SP:Q9X3X7) {Zymomonas mobilis}
Length = 1280
Score = 26.6 bits (56), Expect = 8.3
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
Frame = -3
Query: 168 LSDYFLKLLTVSFDTDGAEDLLNVSG---SWRGL 76
L+ YF ++ SF D +L NVSG W+GL
Sbjct: 1006 LTHYFTEITDYSFTADMETELDNVSGGVTEWKGL 1039
>At4g13370.1 68417.m02090 expressed protein
Length = 673
Score = 26.6 bits (56), Expect = 8.3
Identities = 17/59 (28%), Positives = 28/59 (47%)
Frame = +1
Query: 70 GGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAGREKLSSMPVGGGA 246
G K P+ + +S + G K+ ++ + +GK +IAAG K+S VG A
Sbjct: 277 GRKMNPSPSGRRMSISPGRRLSSGLKMTPMVGDSSGKKKMAVIAAGISKVSEALVGSSA 335
>At2g45000.1 68415.m05603 expressed protein contains Pfam profile:
PF05064 Nsp1-like C-terminal region
Length = 739
Score = 26.6 bits (56), Expect = 8.3
Identities = 19/69 (27%), Positives = 29/69 (42%)
Frame = -1
Query: 248 GAPPPTGIDDSFSRPAAISCSTSLPLSSVITFLSFSPSASIPTELRIFSTSAAAGVVLPP 69
GAP + S S A S S PL L +PS++ + +F S++A P
Sbjct: 160 GAPASSAATPSSSPFGAAPASGSTPLFGSSPSLFSAPSSASASNSSLFGASSSAATSTSP 219
Query: 68 STASKYAAT 42
+ +AT
Sbjct: 220 LFGAPSSAT 228
>At1g69550.1 68414.m07998 disease resistance protein (TIR-NBS
class), putative domain signature TIR-NBS exists,
suggestive of a disease resistance protein.
Length = 703
Score = 26.6 bits (56), Expect = 8.3
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -1
Query: 254 AAGAPPPTGIDDSFSRPAAISCSTSLPLSS 165
++ PP+ + S S P+ +S STS P SS
Sbjct: 38 SSSTSPPSSLASSTSPPSTLSSSTSHPSSS 67
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,682,449
Number of Sequences: 28952
Number of extensions: 115403
Number of successful extensions: 385
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 378
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 385
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 782033640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -