Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30764
         (336 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein L19B|Schizosa...    83   1e-17
SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein L19|Schizosac...    83   1e-17
SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2 |Sc...    26   1.8  
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    25   4.1  
SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|...    25   4.1  
SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal |Schizos...    25   4.1  
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch...    24   5.4  
SPBC337.09 |erg28||Erg28 protein|Schizosaccharomyces pombe|chr 2...    23   9.4  
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc...    23   9.4  

>SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein
           L19B|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 193

 Score = 82.6 bits (195), Expect = 1e-17
 Identities = 36/58 (62%), Positives = 48/58 (82%)
 Frame = +1

Query: 1   VLRKLLLKYRTAKKIDRHLYHSLYMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQ 174
           VLR+LL KYR + KID+HLYH+LY++AKGN FK+KR L+E+I R KAE  RTK++ +Q
Sbjct: 101 VLRRLLRKYRESGKIDKHLYHTLYLEAKGNTFKHKRALIEHIQRAKAEANRTKLIQEQ 158


>SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein
           L19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 193

 Score = 82.6 bits (195), Expect = 1e-17
 Identities = 36/58 (62%), Positives = 48/58 (82%)
 Frame = +1

Query: 1   VLRKLLLKYRTAKKIDRHLYHSLYMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQ 174
           VLR+LL KYR + KID+HLYH+LY++AKGN FK+KR L+E+I R KAE  RTK++ +Q
Sbjct: 101 VLRRLLRKYRESGKIDKHLYHTLYLEAKGNTFKHKRALIEHIQRAKAEANRTKLIQEQ 158


>SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 611

 Score = 25.8 bits (54), Expect = 1.8
 Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = -2

Query: 140 AFFLWMYSMSTRLFLNTLPFAFM-*SEWYRCL 48
           AF LW+YS+   L+L       +    W++CL
Sbjct: 337 AFVLWVYSLDKELWLQLDMLGVLNHGSWFKCL 368


>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
           Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 24.6 bits (51), Expect = 4.1
 Identities = 15/30 (50%), Positives = 17/30 (56%)
 Frame = -1

Query: 219 AALACLLHFIAAGLSLVAKHLRPGLLSLLP 130
           A L CLL  IAA   L+  H+ P L  LLP
Sbjct: 626 AKLLCLL--IAAAPRLIESHVEPILQILLP 653


>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 828

 Score = 24.6 bits (51), Expect = 4.1
 Identities = 16/37 (43%), Positives = 23/37 (62%)
 Frame = -1

Query: 180 LSLVAKHLRPGLLSLLPVDVLHEHTLVLEHITLRLHV 70
           LSL  K +   + +LL + + H HTLV E +TL+L V
Sbjct: 324 LSLPVKSVESSVQALLFMVLPHLHTLVNE-LTLKLFV 359


>SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 647

 Score = 24.6 bits (51), Expect = 4.1
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +3

Query: 6   KKIAPEVQNCQED*QASIPLTLHEG 80
           KKI   + +  ED Q  +PL LH G
Sbjct: 254 KKIEDSLIHASEDCQTLVPLPLHAG 278


>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1133

 Score = 24.2 bits (50), Expect = 5.4
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +1

Query: 19  LKYRTAKKIDRHLYHSLYMKAKGNVFKN 102
           ++Y      +R +Y SLY KAK  V  N
Sbjct: 766 IEYLDFSDSERKIYDSLYTKAKSTVNAN 793


>SPBC337.09 |erg28||Erg28 protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 136

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -1

Query: 213 LACLLHFIAAGLSLVAKHLRPGLLSLLPVDVL 118
           LAC  HF++  L     +L PGLLS + V  +
Sbjct: 89  LACF-HFLSEWLLFRTTNLGPGLLSPIVVSTV 119


>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1233

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 14/49 (28%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
 Frame = +1

Query: 7   RKLLLKY---RTAKKIDRHLYHSLYMKAKGNVFKNKRVLMEYIHRKKAE 144
           RK+L++    R ++++   +Y   Y+ +KGN F +  +  EY+ R K +
Sbjct: 521 RKILVQLPILRMSQQLKNKIY---YILSKGNYFVDWSICDEYVKRFKED 566


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,035,600
Number of Sequences: 5004
Number of extensions: 15213
Number of successful extensions: 39
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 95984434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)