Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30764
         (336 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0125 - 21039767-21039791,21039876-21039922,21040220-210405...    97   2e-21
03_02_0934 - 12513810-12513834,12513918-12513970,12514212-125145...    97   2e-21
07_03_1639 + 28305801-28305958,28306240-28306249                       33   0.057
03_02_0050 + 5272471-5274861                                           28   2.2  
02_05_0067 + 25557975-25558553                                         27   2.9  
01_06_0102 - 26447286-26448107,26448248-26448385,26448990-264493...    27   5.0  
02_03_0297 - 17408902-17409045,17409134-17409304,17410563-174106...    26   6.6  
12_01_1021 - 10419383-10419529,10419684-10419733,10419821-104199...    26   8.7  

>03_05_0125 -
           21039767-21039791,21039876-21039922,21040220-21040533,
           21040613-21040735,21041599-21041710
          Length = 206

 Score = 97.5 bits (232), Expect = 2e-21
 Identities = 44/58 (75%), Positives = 50/58 (86%)
 Frame = +1

Query: 1   VLRKLLLKYRTAKKIDRHLYHSLYMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQ 174
           VLR+LL KYR AKKID+H+YH +YMK KGN+FKNKRVLME IH+ KAEKAR K LSDQ
Sbjct: 101 VLRRLLRKYREAKKIDKHMYHDMYMKVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQ 158


>03_02_0934 -
           12513810-12513834,12513918-12513970,12514212-12514525,
           12514608-12514730,12515710-12515821
          Length = 208

 Score = 97.5 bits (232), Expect = 2e-21
 Identities = 44/58 (75%), Positives = 50/58 (86%)
 Frame = +1

Query: 1   VLRKLLLKYRTAKKIDRHLYHSLYMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQ 174
           VLR+LL KYR AKKID+H+YH +YMK KGN+FKNKRVLME IH+ KAEKAR K LSDQ
Sbjct: 101 VLRRLLRKYREAKKIDKHMYHDMYMKVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQ 158


>07_03_1639 + 28305801-28305958,28306240-28306249
          Length = 55

 Score = 33.1 bits (72), Expect = 0.057
 Identities = 17/34 (50%), Positives = 21/34 (61%)
 Frame = +1

Query: 73  MKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQ 174
           MK KGN+  NKR       + +AEKAR + LSDQ
Sbjct: 1   MKVKGNMLNNKRGPYGEYPQVQAEKARKRTLSDQ 34


>03_02_0050 + 5272471-5274861
          Length = 796

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = -1

Query: 222 LAALACLLHFIAAGLSLVAKHLRPGLLSLLPVDVL-HEHTLVLEHI 88
           L+  +CL   +     L  +HL P LLS +P+D L H H  +L H+
Sbjct: 87  LSPPSCLPSLVPLLPVLPYRHLLPLLLSFVPLDPLRHLHRHLLAHL 132


>02_05_0067 + 25557975-25558553
          Length = 192

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -3

Query: 109 HACS*THYPSPSCRVSGIDACQSSW 35
           H C   H   P CR + +DA Q+ W
Sbjct: 148 HGCDKEHAYQPPCRPNVVDASQAVW 172


>01_06_0102 -
           26447286-26448107,26448248-26448385,26448990-26449359,
           26449505-26449606,26449696-26449788,26449934-26450181,
           26451088-26451274,26451825-26452043,26452464-26452660,
           26453545-26453875,26454099-26454457,26455141-26455240,
           26455349-26455464,26455547-26455663,26455782-26455880,
           26456057-26456131,26456205-26456286,26457724-26457763,
           26458685-26458769,26458924-26459055
          Length = 1303

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = -1

Query: 216 ALACLLHFI-AAGLSLVAKHLRPGLLSLLPVDVLHEHTLVLEHITLRLH 73
           A++CL+ F+ AAG   +      GLL L   D +H+   ++  I+L+ H
Sbjct: 125 AISCLMTFMSAAGEVHLVSGGSDGLLILWSADHIHDSRELVPKISLKAH 173


>02_03_0297 -
           17408902-17409045,17409134-17409304,17410563-17410664,
           17412605-17412718,17413095-17413178,17413669-17413808,
           17414429-17414560,17415430-17415618,17415736-17415801,
           17415905-17415938
          Length = 391

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -3

Query: 220 RGACVPPSLYCGGP 179
           +GACV P  YCG P
Sbjct: 152 KGACVDPVAYCGTP 165


>12_01_1021 -
           10419383-10419529,10419684-10419733,10419821-10419938,
           10420498-10420540,10420674-10420825,10420876-10420965,
           10422881-10423013,10424397-10424515
          Length = 283

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -2

Query: 155 VLAFSAFFLWMYSMSTRLFLN 93
           VL + AFF W +S   ++FLN
Sbjct: 15  VLGWVAFFAWSFSFYPQVFLN 35


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,232,980
Number of Sequences: 37544
Number of extensions: 117407
Number of successful extensions: 331
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 331
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 331
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 471517020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)