Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30764
         (336 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7038| Best HMM Match : No HMM Matches (HMM E-Value=.)              108   1e-24
SB_55696| Best HMM Match : SNF7 (HMM E-Value=0)                        27   3.8  
SB_55695| Best HMM Match : SNF7 (HMM E-Value=0)                        27   3.8  
SB_6693| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   3.8  

>SB_7038| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 224

 Score =  108 bits (259), Expect = 1e-24
 Identities = 49/58 (84%), Positives = 55/58 (94%)
 Frame = +1

Query: 1   VLRKLLLKYRTAKKIDRHLYHSLYMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQ 174
           VLR+LL KYR AKKID H+YHSLYMK+KGNVFKNKRVLMEYIH+KKAEKAR+K+LSDQ
Sbjct: 129 VLRRLLRKYREAKKIDNHMYHSLYMKSKGNVFKNKRVLMEYIHKKKAEKARSKLLSDQ 186


>SB_55696| Best HMM Match : SNF7 (HMM E-Value=0)
          Length = 225

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +1

Query: 79  AKGNVFKNKRVLMEYIHRKK 138
           AK NV KNKR+ ++ + RKK
Sbjct: 61  AKANVKKNKRIALQALKRKK 80


>SB_55695| Best HMM Match : SNF7 (HMM E-Value=0)
          Length = 225

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +1

Query: 79  AKGNVFKNKRVLMEYIHRKK 138
           AK NV KNKR+ ++ + RKK
Sbjct: 61  AKANVKKNKRIALQALKRKK 80


>SB_6693| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 557

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
 Frame = +1

Query: 4   LRKLLLKYRTAKKIDRHLYHSLYMKAKGNVFKNKRVLM--EYIHRKKAEKARTKMLSD 171
           L K L  +  ++ +DR +Y +   KAKG +F      M   Y   K  E+   K  S+
Sbjct: 409 LIKTLCLFSLSRFLDRFVYKNPKTKAKGKIFHTNPAFMLCRYFKTKAHEEESKKKKSE 466


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,017,153
Number of Sequences: 59808
Number of extensions: 122139
Number of successful extensions: 323
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 315
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 323
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 473307974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)