Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30764
(336 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF002196-4|AAB53979.1| 198|Caenorhabditis elegans Ribosomal pro... 84 2e-17
AC024830-6|AAF59601.3| 603|Caenorhabditis elegans Hypothetical ... 27 2.5
U41531-4|AAR85902.1| 578|Caenorhabditis elegans Guanylyl cyclas... 27 4.4
U41531-3|AAR85901.1| 702|Caenorhabditis elegans Guanylyl cyclas... 27 4.4
U41531-2|AAR85900.1| 594|Caenorhabditis elegans Guanylyl cyclas... 27 4.4
AY275184-1|AAP32292.1| 594|Caenorhabditis elegans soluble guany... 27 4.4
AY275183-1|AAP32291.1| 578|Caenorhabditis elegans soluble guany... 27 4.4
AY275182-1|AAP32290.1| 702|Caenorhabditis elegans soluble guany... 27 4.4
Z81063-1|CAB02952.1| 376|Caenorhabditis elegans Hypothetical pr... 26 7.7
AL021503-1|CAA16420.2| 309|Caenorhabditis elegans Hypothetical ... 26 7.7
>AF002196-4|AAB53979.1| 198|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 19 protein.
Length = 198
Score = 84.2 bits (199), Expect = 2e-17
Identities = 37/58 (63%), Positives = 46/58 (79%)
Frame = +1
Query: 1 VLRKLLLKYRTAKKIDRHLYHSLYMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQ 174
VLR LL +YR AKK+D+HLYH LY++AKGN FKNK+ L+EYI +KK E R K L+DQ
Sbjct: 101 VLRNLLRRYRDAKKLDKHLYHELYLRAKGNNFKNKKNLIEYIFKKKTENKRAKQLADQ 158
>AC024830-6|AAF59601.3| 603|Caenorhabditis elegans Hypothetical
protein Y55F3BR.8a protein.
Length = 603
Score = 27.5 bits (58), Expect = 2.5
Identities = 10/16 (62%), Positives = 14/16 (87%)
Frame = -2
Query: 50 LSIFLAVLYFRSNFLK 3
L++ LA++YFRSNF K
Sbjct: 8 LAVILAIIYFRSNFSK 23
>U41531-4|AAR85902.1| 578|Caenorhabditis elegans Guanylyl cyclase
protein 31, isoformc protein.
Length = 578
Score = 26.6 bits (56), Expect = 4.4
Identities = 13/43 (30%), Positives = 25/43 (58%)
Frame = -1
Query: 201 LHFIAAGLSLVAKHLRPGLLSLLPVDVLHEHTLVLEHITLRLH 73
LH++ + +++ L + + +D+ EH L LEH+ +RLH
Sbjct: 17 LHYVQGQIRNISQELFQTEVVIELLDI--EHDLNLEHVIMRLH 57
>U41531-3|AAR85901.1| 702|Caenorhabditis elegans Guanylyl cyclase
protein 31, isoformb protein.
Length = 702
Score = 26.6 bits (56), Expect = 4.4
Identities = 13/43 (30%), Positives = 25/43 (58%)
Frame = -1
Query: 201 LHFIAAGLSLVAKHLRPGLLSLLPVDVLHEHTLVLEHITLRLH 73
LH++ + +++ L + + +D+ EH L LEH+ +RLH
Sbjct: 141 LHYVQGQIRNISQELFQTEVVIELLDI--EHDLNLEHVIMRLH 181
>U41531-2|AAR85900.1| 594|Caenorhabditis elegans Guanylyl cyclase
protein 31, isoforma protein.
Length = 594
Score = 26.6 bits (56), Expect = 4.4
Identities = 13/43 (30%), Positives = 25/43 (58%)
Frame = -1
Query: 201 LHFIAAGLSLVAKHLRPGLLSLLPVDVLHEHTLVLEHITLRLH 73
LH++ + +++ L + + +D+ EH L LEH+ +RLH
Sbjct: 141 LHYVQGQIRNISQELFQTEVVIELLDI--EHDLNLEHVIMRLH 181
>AY275184-1|AAP32292.1| 594|Caenorhabditis elegans soluble guanylyl
cyclase GCY-31c protein.
Length = 594
Score = 26.6 bits (56), Expect = 4.4
Identities = 13/43 (30%), Positives = 25/43 (58%)
Frame = -1
Query: 201 LHFIAAGLSLVAKHLRPGLLSLLPVDVLHEHTLVLEHITLRLH 73
LH++ + +++ L + + +D+ EH L LEH+ +RLH
Sbjct: 141 LHYVQGQIRNISQELFQTEVVIELLDI--EHDLNLEHVIMRLH 181
>AY275183-1|AAP32291.1| 578|Caenorhabditis elegans soluble guanylyl
cyclase GCY-31b protein.
Length = 578
Score = 26.6 bits (56), Expect = 4.4
Identities = 13/43 (30%), Positives = 25/43 (58%)
Frame = -1
Query: 201 LHFIAAGLSLVAKHLRPGLLSLLPVDVLHEHTLVLEHITLRLH 73
LH++ + +++ L + + +D+ EH L LEH+ +RLH
Sbjct: 17 LHYVQGQIRNISQELFQTEVVIELLDI--EHDLNLEHVIMRLH 57
>AY275182-1|AAP32290.1| 702|Caenorhabditis elegans soluble guanylyl
cyclase GCY-31a protein.
Length = 702
Score = 26.6 bits (56), Expect = 4.4
Identities = 13/43 (30%), Positives = 25/43 (58%)
Frame = -1
Query: 201 LHFIAAGLSLVAKHLRPGLLSLLPVDVLHEHTLVLEHITLRLH 73
LH++ + +++ L + + +D+ EH L LEH+ +RLH
Sbjct: 141 LHYVQGQIRNISQELFQTEVVIELLDI--EHDLNLEHVIMRLH 181
>Z81063-1|CAB02952.1| 376|Caenorhabditis elegans Hypothetical
protein F15D3.2 protein.
Length = 376
Score = 25.8 bits (54), Expect = 7.7
Identities = 7/13 (53%), Positives = 9/13 (69%)
Frame = -3
Query: 238 WRQYVPRGACVPP 200
W QY P+G C+ P
Sbjct: 224 WHQYQPKGTCIQP 236
>AL021503-1|CAA16420.2| 309|Caenorhabditis elegans Hypothetical
protein Y68A4A.2 protein.
Length = 309
Score = 25.8 bits (54), Expect = 7.7
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -2
Query: 176 AWSLSIFVLAFSAFFLWMYSMSTRLF 99
A+ + IFVLA FFL+ + S ++F
Sbjct: 119 AFHVLIFVLAVERFFLYFFPSSEKVF 144
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,920,607
Number of Sequences: 27780
Number of extensions: 95994
Number of successful extensions: 244
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 231
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 244
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 418861482
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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