Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30764
         (336 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.          21   5.3  
S78458-1|AAB34402.1|   46|Apis mellifera apamin protein.               20   7.0  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    20   7.0  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    20   9.2  

>AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.
          Length = 148

 Score = 20.6 bits (41), Expect = 5.3
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -2

Query: 170 SLSIFVLAFSAFFLWMYSMSTRL 102
           +LSI      A F+W+Y++S  L
Sbjct: 9   ALSIRHAVILASFVWIYALSLSL 31


>S78458-1|AAB34402.1|   46|Apis mellifera apamin protein.
          Length = 46

 Score = 20.2 bits (40), Expect = 7.0
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -2

Query: 56 RCLSIFLAVLYFRSNFL 6
          RC+ +FL+V+   S F+
Sbjct: 6  RCIYLFLSVILITSYFV 22


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 20.2 bits (40), Expect = 7.0
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +1

Query: 82  KGNVFKNKRVLMEYIHRKKAEK 147
           +GN F   R L ++   KKA K
Sbjct: 314 RGNNFSLSRKLAKFAKEKKAAK 335


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 19.8 bits (39), Expect = 9.2
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +2

Query: 14  CS*STELPRRLTGIYTTHS 70
           C  +  +P RLT  Y TH+
Sbjct: 97  CGKTFAVPARLTRHYRTHT 115


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 71,211
Number of Sequences: 438
Number of extensions: 1174
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7591023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)