Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30764
(336 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g02230.1 68417.m00302 60S ribosomal protein L19 (RPL19C) simi... 98 1e-21
At1g02780.1 68414.m00233 60S ribosomal protein L19 (RPL19A) simi... 96 6e-21
At3g16780.1 68416.m02142 60S ribosomal protein L19 (RPL19B) simi... 95 8e-21
At4g16030.1 68417.m02432 60S ribosomal protein L19, putative sim... 52 1e-07
At3g04340.1 68416.m00459 FtsH protease family protein similar to... 30 0.33
At5g24430.1 68418.m02879 calcium-dependent protein kinase, putat... 29 1.0
At3g30842.1 68416.m03968 ABC transporter protein, putative simil... 29 1.0
At2g25320.1 68415.m03029 meprin and TRAF homology domain-contain... 28 1.8
At3g43740.2 68416.m04673 leucine-rich repeat family protein cont... 26 5.4
At2g29080.1 68415.m03535 FtsH protease, putative similar to AAA-... 26 7.2
At2g19650.1 68415.m02296 DC1 domain-containing protein contains ... 26 7.2
At1g04220.1 68414.m00412 beta-ketoacyl-CoA synthase, putative St... 26 7.2
>At4g02230.1 68417.m00302 60S ribosomal protein L19 (RPL19C) similar
to L19 from several species
Length = 208
Score = 98.3 bits (234), Expect = 1e-21
Identities = 45/58 (77%), Positives = 49/58 (84%)
Frame = +1
Query: 1 VLRKLLLKYRTAKKIDRHLYHSLYMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQ 174
VLR+LL KYR KKIDRH+YH +YMK KGNVFKNKRVLME IH+ KAEKAR K LSDQ
Sbjct: 101 VLRRLLKKYRETKKIDRHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQ 158
>At1g02780.1 68414.m00233 60S ribosomal protein L19 (RPL19A) similar
to ribosomal protein L19 GI:36127 from [Homo sapiens]
Length = 214
Score = 95.9 bits (228), Expect = 6e-21
Identities = 43/58 (74%), Positives = 49/58 (84%)
Frame = +1
Query: 1 VLRKLLLKYRTAKKIDRHLYHSLYMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQ 174
VLR+LL KYR KKID+H+YH +YM+ KGNVFKNKRVLME IH+ KAEKAR K LSDQ
Sbjct: 101 VLRRLLKKYRETKKIDKHMYHDMYMRVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQ 158
>At3g16780.1 68416.m02142 60S ribosomal protein L19 (RPL19B) similar
to ribosomal protein L19 GB:CAA45090 from [Homo sapiens]
Length = 209
Score = 95.5 bits (227), Expect = 8e-21
Identities = 43/58 (74%), Positives = 49/58 (84%)
Frame = +1
Query: 1 VLRKLLLKYRTAKKIDRHLYHSLYMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQ 174
VLR+ L KYR +KKIDRH+YH +YMK KGNVFKNKRVLME IH+ KAEKAR K L+DQ
Sbjct: 101 VLRRFLSKYRESKKIDRHMYHDMYMKVKGNVFKNKRVLMESIHKMKAEKAREKTLADQ 158
>At4g16030.1 68417.m02432 60S ribosomal protein L19, putative
similar to 60S ribosomal protein L19-3
(Swiss-Prot:P49693) [Arabidopsis thaliana]
Length = 101
Score = 52.0 bits (119), Expect = 1e-07
Identities = 24/50 (48%), Positives = 36/50 (72%), Gaps = 1/50 (2%)
Frame = +1
Query: 1 VLRKLLLKYRTAKKIDRHLY-HSLYMKAKGNVFKNKRVLMEYIHRKKAEK 147
+L++LL K+ KKID+ +Y H ++MK KG V+KNK VLME +H+ E+
Sbjct: 17 MLKRLLKKFCWNKKIDKLVYYHDMFMKVKGKVYKNKCVLMESMHKSSRER 66
>At3g04340.1 68416.m00459 FtsH protease family protein similar to
chloroplast FtsH protease [Arabidopsis thaliana]
GI:1483215; contains Pfam profiles PF01434: Peptidase
family M41, PF00004: ATPase AAA family
Length = 960
Score = 30.3 bits (65), Expect = 0.33
Identities = 14/31 (45%), Positives = 21/31 (67%)
Frame = +1
Query: 22 KYRTAKKIDRHLYHSLYMKAKGNVFKNKRVL 114
+Y A K+++ +Y Y KAKG + KN+RVL
Sbjct: 866 EYEMAGKVEK-IYDLAYEKAKGMLLKNRRVL 895
>At5g24430.1 68418.m02879 calcium-dependent protein kinase, putative
/ CDPK, putative similar to calcium/calmodulin-dependent
protein kinase CaMK1 [Nicotiana tabacum]
gi|16904222|gb|AAL30818
Length = 594
Score = 28.7 bits (61), Expect = 1.0
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +1
Query: 22 KYRTAKKIDR-HLYHSLYMKAKGNVFKNKRVLMEYIHRKK 138
KY K++ R H H+ + KAK KN+ V ++ I + K
Sbjct: 142 KYELGKEVGRGHFGHTCWAKAKKGKMKNQTVAVKIISKAK 181
>At3g30842.1 68416.m03968 ABC transporter protein, putative similar to
pleiotropic drug resistance like protein [Nicotiana
tabacum] GI:20522008, ABC1 protein [Nicotiana
plumbaginifolia] GI:14331118; contains Pfam profile
PF00005: ABC transporter
Length = 1406
Score = 28.7 bits (61), Expect = 1.0
Identities = 9/24 (37%), Positives = 19/24 (79%)
Frame = -2
Query: 173 WSLSIFVLAFSAFFLWMYSMSTRL 102
W +S+ ++AFS FF+++Y+ S ++
Sbjct: 1377 WVVSLTLIAFSMFFVFIYAFSVKI 1400
>At2g25320.1 68415.m03029 meprin and TRAF homology domain-containing
protein / MATH domain-containing protein weak similarity
to ubiquitin-specific protease 12 [Arabidopsis thaliana]
GI:11993471; contains Pfam profile PF00917: MATH domain
Length = 1663
Score = 27.9 bits (59), Expect = 1.8
Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = -1
Query: 192 IAAGLSLVAKHLRPGLLSLLPVDVLH-EHTLVLEHITLRL 76
IA L KHL+P L+SL+P V H EH L + RL
Sbjct: 974 IALVLDRAPKHLQPDLVSLVPKLVEHSEHPLAALALIERL 1013
>At3g43740.2 68416.m04673 leucine-rich repeat family protein
contains leucine rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; contains similarity to somatic
embryogenesis receptor-like kinase 2 [Arabidopsis
thaliana] gi|14573457|gb|AAK68073
Length = 248
Score = 26.2 bits (55), Expect = 5.4
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -1
Query: 150 GLLSLLPVDVLHEHTLVLEHIT 85
G+++LLP D L TL + HIT
Sbjct: 101 GIITLLPFDYLKTFTLSVTHIT 122
>At2g29080.1 68415.m03535 FtsH protease, putative similar to
AAA-metalloprotease FtsH [Pisum sativum] GI:15021761;
contains Pfam profiles PF01434: Peptidase family M41,
PF00004: ATPase AAA family
Length = 809
Score = 25.8 bits (54), Expect = 7.2
Identities = 11/39 (28%), Positives = 20/39 (51%)
Frame = +1
Query: 31 TAKKIDRHLYHSLYMKAKGNVFKNKRVLMEYIHRKKAEK 147
T + D+H + +Y K + K+ +ME++H K K
Sbjct: 307 TITRADKHSKNKIYFKDVAGCDEAKQEIMEFVHFLKNPK 345
>At2g19650.1 68415.m02296 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 682
Score = 25.8 bits (54), Expect = 7.2
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = -1
Query: 156 RPGLLSLLPVDVLHEHTLVLEH 91
RP LL L LHEH L L H
Sbjct: 139 RPALLVLAENSYLHEHPLQLSH 160
>At1g04220.1 68414.m00412 beta-ketoacyl-CoA synthase, putative
Strong similarity to beta-keto-Coa synthase gb|U37088
from Simmondsia chinensis, GI:4091810
Length = 528
Score = 25.8 bits (54), Expect = 7.2
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -2
Query: 110 TRLFLNTLPFAFM*SEWYRCLSIFLAVLYF 21
T L+ + L F F+ S + L IFL LYF
Sbjct: 69 TLLYNHLLKFHFLSSTLFAALLIFLTTLYF 98
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,534,507
Number of Sequences: 28952
Number of extensions: 85682
Number of successful extensions: 227
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 227
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 389454624
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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