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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30763
         (680 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc...    34   0.022
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    31   0.12 
SPAC16E8.04c |||chorismate mutase |Schizosaccharomyces pombe|chr...    29   0.62 
SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces po...    29   0.82 
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    28   1.4  
SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor Fep1|Sc...    27   3.3  
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po...    26   4.4  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    26   4.4  
SPBC16A3.11 |eso1||sister chromatid cohesion protein Eso1|Schizo...    26   5.8  
SPCC757.02c |||epimarase |Schizosaccharomyces pombe|chr 3|||Manual     25   7.7  
SPAC17G8.13c |mst2||histone acetyltransferase Mst2|Schizosacchar...    25   7.7  

>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
           Prp11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1014

 Score = 33.9 bits (74), Expect = 0.022
 Identities = 19/44 (43%), Positives = 24/44 (54%)
 Frame = +1

Query: 40  ITSEDSSTAVPNAPKVLKSKEPIGDALQELASQLLEKTENTSEQ 171
           IT E    AV  A  +  SK+P+   LQ LASQ LEK +   E+
Sbjct: 772 ITPEQEKYAVDIAKALKMSKQPVPKELQTLASQFLEKVKAGKEK 815


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
           Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 31.5 bits (68), Expect = 0.12
 Identities = 27/112 (24%), Positives = 49/112 (43%), Gaps = 12/112 (10%)
 Frame = +1

Query: 7   SSRSTSYKAADITSEDSSTAVPNAPKVLKSKEPIGDALQELASQLLEKTENTS------- 165
           S ++ + K A+ TS++++    + PK  KSK+    A QE  S   E  E  S       
Sbjct: 534 SKKAKASKLANDTSKNANGETKSTPK--KSKKKTSKAQQEANSTTAEGKEKLSGDSTETG 591

Query: 166 -----EQVIAESRVSTKLKFPNQKHKTIQNEDDAFIMGMQERQFPSQSKILK 306
                E    +++ +     PN+K KT++      I  +  ++ P   KI++
Sbjct: 592 NSTNKEASTEDTKANATASAPNKKKKTVETLQQQVIKEIARKEIPRVYKIIQ 643


>SPAC16E8.04c |||chorismate mutase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 251

 Score = 29.1 bits (62), Expect = 0.62
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +1

Query: 184 SRVSTKLKFPNQKHKTIQNEDDAFIMGMQERQFPSQSKILK 306
           S V+ KLK  N +   I+ ED      ++  QFP   K+ K
Sbjct: 2   SLVNEKLKLENIRSALIRQEDTIIFNFLERAQFPRNEKVYK 42


>SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1076

 Score = 28.7 bits (61), Expect = 0.82
 Identities = 29/95 (30%), Positives = 42/95 (44%), Gaps = 16/95 (16%)
 Frame = +1

Query: 1    NISSRSTSYKAAD------ITSEDSSTAVPNAPKVLKS----------KEPIGDALQELA 132
            ++ S+   YKAA+      I S  SST   N  K+L+S          KE I ++++   
Sbjct: 746  SLRSQLLEYKAANEKHTEAILSVVSSTLTENTGKILESVVEKSMQVALKEEIANSVRNAL 805

Query: 133  SQLLEKTENTSEQVIAESRVSTKLKFPNQKHKTIQ 237
               LEK E+  E  IAE + S +  F  Q     Q
Sbjct: 806  KNNLEKIESFLENSIAELQNSVREDFDKQTSSLAQ 840


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
 Frame = +1

Query: 4   ISSRSTSYKAADITSEDSSTAVPNAPKVL-KSKEPIGDALQELASQLLEKTENTSEQVIA 180
           +SS STS K    +   SS +VP++  V  +S  PI  +    + Q    T +TS +V++
Sbjct: 449 VSSISTSVKQPTASVASSSVSVPSSSSVQPQSSTPISSSSSASSPQ---STLSTSSEVVS 505

Query: 181 E 183
           E
Sbjct: 506 E 506


>SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor
           Fep1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 564

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 18/67 (26%), Positives = 27/67 (40%)
 Frame = +3

Query: 84  SSQIQGTDRRCPSRTSQPTARENREHVRTSNR*KQSIHKTKVSKSETQNNTKRRRCFYNG 263
           S    G     P+ +S P++ E +          Q +  T    +ET N T RRR  +N 
Sbjct: 101 SKSQSGRKSLSPNPSSVPSSTETKASPTPLESKPQIVSDTT---TETSNGTSRRRSSHNQ 157

Query: 264 HAGEAVP 284
           H   + P
Sbjct: 158 HEDSSPP 164


>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 897

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -3

Query: 456 FLLASTSSLHPFS*VPWILKTHSWDCSLR 370
           FLL S   L  F   PW++K+ S D S R
Sbjct: 548 FLLVSLLRLRQFCCHPWLVKSSSLDNSFR 576


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 11/40 (27%), Positives = 23/40 (57%)
 Frame = +1

Query: 118  LQELASQLLEKTENTSEQVIAESRVSTKLKFPNQKHKTIQ 237
            ++ L  QLL+   +++E ++    +   LK   +KH+TI+
Sbjct: 3656 IRSLQEQLLKTLCSSNENIVGTDEIVVLLKNLKEKHETIR 3695


>SPBC16A3.11 |eso1||sister chromatid cohesion protein
           Eso1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 16/49 (32%), Positives = 28/49 (57%)
 Frame = +1

Query: 25  YKAADITSEDSSTAVPNAPKVLKSKEPIGDALQELASQLLEKTENTSEQ 171
           Y    I SEDS+ A+P AP +L   E  G  ++E   +++++T+   E+
Sbjct: 165 YPYLKIPSEDSNVALPQAPVLLWPAE-FGMVIEE---EVVDRTKEDYER 209


>SPCC757.02c |||epimarase |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 405

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = -3

Query: 195 GYSAFSDYLFGRVLGFLEQLAG*FLKGISDRFLGFENFR 79
           G  AF D+LFGR    +  ++     G +D +  F+ F+
Sbjct: 352 GTWAFCDFLFGRTYNVISSMSKARKLGYTDYYDTFDGFK 390


>SPAC17G8.13c |mst2||histone acetyltransferase
           Mst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 407

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = -2

Query: 409 VDTEDTFVGLLTKTQVD 359
           +++E TF+GLLTK Q D
Sbjct: 37  LNSESTFLGLLTKGQAD 53


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,414,684
Number of Sequences: 5004
Number of extensions: 45114
Number of successful extensions: 159
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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