BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdS30763 (680 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 34 0.022 SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo... 31 0.12 SPAC16E8.04c |||chorismate mutase |Schizosaccharomyces pombe|chr... 29 0.62 SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces po... 29 0.82 SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 28 1.4 SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor Fep1|Sc... 27 3.3 SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po... 26 4.4 SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 26 4.4 SPBC16A3.11 |eso1||sister chromatid cohesion protein Eso1|Schizo... 26 5.8 SPCC757.02c |||epimarase |Schizosaccharomyces pombe|chr 3|||Manual 25 7.7 SPAC17G8.13c |mst2||histone acetyltransferase Mst2|Schizosacchar... 25 7.7 >SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosaccharomyces pombe|chr 3|||Manual Length = 1014 Score = 33.9 bits (74), Expect = 0.022 Identities = 19/44 (43%), Positives = 24/44 (54%) Frame = +1 Query: 40 ITSEDSSTAVPNAPKVLKSKEPIGDALQELASQLLEKTENTSEQ 171 IT E AV A + SK+P+ LQ LASQ LEK + E+ Sbjct: 772 ITPEQEKYAVDIAKALKMSKQPVPKELQTLASQFLEKVKAGKEK 815 >SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizosaccharomyces pombe|chr 1|||Manual Length = 1604 Score = 31.5 bits (68), Expect = 0.12 Identities = 27/112 (24%), Positives = 49/112 (43%), Gaps = 12/112 (10%) Frame = +1 Query: 7 SSRSTSYKAADITSEDSSTAVPNAPKVLKSKEPIGDALQELASQLLEKTENTS------- 165 S ++ + K A+ TS++++ + PK KSK+ A QE S E E S Sbjct: 534 SKKAKASKLANDTSKNANGETKSTPK--KSKKKTSKAQQEANSTTAEGKEKLSGDSTETG 591 Query: 166 -----EQVIAESRVSTKLKFPNQKHKTIQNEDDAFIMGMQERQFPSQSKILK 306 E +++ + PN+K KT++ I + ++ P KI++ Sbjct: 592 NSTNKEASTEDTKANATASAPNKKKKTVETLQQQVIKEIARKEIPRVYKIIQ 643 >SPAC16E8.04c |||chorismate mutase |Schizosaccharomyces pombe|chr 1|||Manual Length = 251 Score = 29.1 bits (62), Expect = 0.62 Identities = 14/41 (34%), Positives = 20/41 (48%) Frame = +1 Query: 184 SRVSTKLKFPNQKHKTIQNEDDAFIMGMQERQFPSQSKILK 306 S V+ KLK N + I+ ED ++ QFP K+ K Sbjct: 2 SLVNEKLKLENIRSALIRQEDTIIFNFLERAQFPRNEKVYK 42 >SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual Length = 1076 Score = 28.7 bits (61), Expect = 0.82 Identities = 29/95 (30%), Positives = 42/95 (44%), Gaps = 16/95 (16%) Frame = +1 Query: 1 NISSRSTSYKAAD------ITSEDSSTAVPNAPKVLKS----------KEPIGDALQELA 132 ++ S+ YKAA+ I S SST N K+L+S KE I ++++ Sbjct: 746 SLRSQLLEYKAANEKHTEAILSVVSSTLTENTGKILESVVEKSMQVALKEEIANSVRNAL 805 Query: 133 SQLLEKTENTSEQVIAESRVSTKLKFPNQKHKTIQ 237 LEK E+ E IAE + S + F Q Q Sbjct: 806 KNNLEKIESFLENSIAELQNSVREDFDKQTSSLAQ 840 >SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual Length = 1236 Score = 27.9 bits (59), Expect = 1.4 Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 1/61 (1%) Frame = +1 Query: 4 ISSRSTSYKAADITSEDSSTAVPNAPKVL-KSKEPIGDALQELASQLLEKTENTSEQVIA 180 +SS STS K + SS +VP++ V +S PI + + Q T +TS +V++ Sbjct: 449 VSSISTSVKQPTASVASSSVSVPSSSSVQPQSSTPISSSSSASSPQ---STLSTSSEVVS 505 Query: 181 E 183 E Sbjct: 506 E 506 >SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor Fep1|Schizosaccharomyces pombe|chr 1|||Manual Length = 564 Score = 26.6 bits (56), Expect = 3.3 Identities = 18/67 (26%), Positives = 27/67 (40%) Frame = +3 Query: 84 SSQIQGTDRRCPSRTSQPTARENREHVRTSNR*KQSIHKTKVSKSETQNNTKRRRCFYNG 263 S G P+ +S P++ E + Q + T +ET N T RRR +N Sbjct: 101 SKSQSGRKSLSPNPSSVPSSTETKASPTPLESKPQIVSDTT---TETSNGTSRRRSSHNQ 157 Query: 264 HAGEAVP 284 H + P Sbjct: 158 HEDSSPP 164 >SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces pombe|chr 1|||Manual Length = 897 Score = 26.2 bits (55), Expect = 4.4 Identities = 13/29 (44%), Positives = 16/29 (55%) Frame = -3 Query: 456 FLLASTSSLHPFS*VPWILKTHSWDCSLR 370 FLL S L F PW++K+ S D S R Sbjct: 548 FLLVSLLRLRQFCCHPWLVKSSSLDNSFR 576 >SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccharomyces pombe|chr 1|||Manual Length = 4196 Score = 26.2 bits (55), Expect = 4.4 Identities = 11/40 (27%), Positives = 23/40 (57%) Frame = +1 Query: 118 LQELASQLLEKTENTSEQVIAESRVSTKLKFPNQKHKTIQ 237 ++ L QLL+ +++E ++ + LK +KH+TI+ Sbjct: 3656 IRSLQEQLLKTLCSSNENIVGTDEIVVLLKNLKEKHETIR 3695 >SPBC16A3.11 |eso1||sister chromatid cohesion protein Eso1|Schizosaccharomyces pombe|chr 2|||Manual Length = 872 Score = 25.8 bits (54), Expect = 5.8 Identities = 16/49 (32%), Positives = 28/49 (57%) Frame = +1 Query: 25 YKAADITSEDSSTAVPNAPKVLKSKEPIGDALQELASQLLEKTENTSEQ 171 Y I SEDS+ A+P AP +L E G ++E +++++T+ E+ Sbjct: 165 YPYLKIPSEDSNVALPQAPVLLWPAE-FGMVIEE---EVVDRTKEDYER 209 >SPCC757.02c |||epimarase |Schizosaccharomyces pombe|chr 3|||Manual Length = 405 Score = 25.4 bits (53), Expect = 7.7 Identities = 12/39 (30%), Positives = 20/39 (51%) Frame = -3 Query: 195 GYSAFSDYLFGRVLGFLEQLAG*FLKGISDRFLGFENFR 79 G AF D+LFGR + ++ G +D + F+ F+ Sbjct: 352 GTWAFCDFLFGRTYNVISSMSKARKLGYTDYYDTFDGFK 390 >SPAC17G8.13c |mst2||histone acetyltransferase Mst2|Schizosaccharomyces pombe|chr 1|||Manual Length = 407 Score = 25.4 bits (53), Expect = 7.7 Identities = 10/17 (58%), Positives = 14/17 (82%) Frame = -2 Query: 409 VDTEDTFVGLLTKTQVD 359 +++E TF+GLLTK Q D Sbjct: 37 LNSESTFLGLLTKGQAD 53 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,414,684 Number of Sequences: 5004 Number of extensions: 45114 Number of successful extensions: 159 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 155 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 159 length of database: 2,362,478 effective HSP length: 70 effective length of database: 2,012,198 effective search space used: 313902888 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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