Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30763
(680 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 34 0.022
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo... 31 0.12
SPAC16E8.04c |||chorismate mutase |Schizosaccharomyces pombe|chr... 29 0.62
SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces po... 29 0.82
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 28 1.4
SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor Fep1|Sc... 27 3.3
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po... 26 4.4
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 26 4.4
SPBC16A3.11 |eso1||sister chromatid cohesion protein Eso1|Schizo... 26 5.8
SPCC757.02c |||epimarase |Schizosaccharomyces pombe|chr 3|||Manual 25 7.7
SPAC17G8.13c |mst2||histone acetyltransferase Mst2|Schizosacchar... 25 7.7
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 33.9 bits (74), Expect = 0.022
Identities = 19/44 (43%), Positives = 24/44 (54%)
Frame = +1
Query: 40 ITSEDSSTAVPNAPKVLKSKEPIGDALQELASQLLEKTENTSEQ 171
IT E AV A + SK+P+ LQ LASQ LEK + E+
Sbjct: 772 ITPEQEKYAVDIAKALKMSKQPVPKELQTLASQFLEKVKAGKEK 815
>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
Ino80|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1604
Score = 31.5 bits (68), Expect = 0.12
Identities = 27/112 (24%), Positives = 49/112 (43%), Gaps = 12/112 (10%)
Frame = +1
Query: 7 SSRSTSYKAADITSEDSSTAVPNAPKVLKSKEPIGDALQELASQLLEKTENTS------- 165
S ++ + K A+ TS++++ + PK KSK+ A QE S E E S
Sbjct: 534 SKKAKASKLANDTSKNANGETKSTPK--KSKKKTSKAQQEANSTTAEGKEKLSGDSTETG 591
Query: 166 -----EQVIAESRVSTKLKFPNQKHKTIQNEDDAFIMGMQERQFPSQSKILK 306
E +++ + PN+K KT++ I + ++ P KI++
Sbjct: 592 NSTNKEASTEDTKANATASAPNKKKKTVETLQQQVIKEIARKEIPRVYKIIQ 643
>SPAC16E8.04c |||chorismate mutase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 251
Score = 29.1 bits (62), Expect = 0.62
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +1
Query: 184 SRVSTKLKFPNQKHKTIQNEDDAFIMGMQERQFPSQSKILK 306
S V+ KLK N + I+ ED ++ QFP K+ K
Sbjct: 2 SLVNEKLKLENIRSALIRQEDTIIFNFLERAQFPRNEKVYK 42
>SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1076
Score = 28.7 bits (61), Expect = 0.82
Identities = 29/95 (30%), Positives = 42/95 (44%), Gaps = 16/95 (16%)
Frame = +1
Query: 1 NISSRSTSYKAAD------ITSEDSSTAVPNAPKVLKS----------KEPIGDALQELA 132
++ S+ YKAA+ I S SST N K+L+S KE I ++++
Sbjct: 746 SLRSQLLEYKAANEKHTEAILSVVSSTLTENTGKILESVVEKSMQVALKEEIANSVRNAL 805
Query: 133 SQLLEKTENTSEQVIAESRVSTKLKFPNQKHKTIQ 237
LEK E+ E IAE + S + F Q Q
Sbjct: 806 KNNLEKIESFLENSIAELQNSVREDFDKQTSSLAQ 840
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 27.9 bits (59), Expect = 1.4
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +1
Query: 4 ISSRSTSYKAADITSEDSSTAVPNAPKVL-KSKEPIGDALQELASQLLEKTENTSEQVIA 180
+SS STS K + SS +VP++ V +S PI + + Q T +TS +V++
Sbjct: 449 VSSISTSVKQPTASVASSSVSVPSSSSVQPQSSTPISSSSSASSPQ---STLSTSSEVVS 505
Query: 181 E 183
E
Sbjct: 506 E 506
>SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor
Fep1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 564
Score = 26.6 bits (56), Expect = 3.3
Identities = 18/67 (26%), Positives = 27/67 (40%)
Frame = +3
Query: 84 SSQIQGTDRRCPSRTSQPTARENREHVRTSNR*KQSIHKTKVSKSETQNNTKRRRCFYNG 263
S G P+ +S P++ E + Q + T +ET N T RRR +N
Sbjct: 101 SKSQSGRKSLSPNPSSVPSSTETKASPTPLESKPQIVSDTT---TETSNGTSRRRSSHNQ 157
Query: 264 HAGEAVP 284
H + P
Sbjct: 158 HEDSSPP 164
>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 897
Score = 26.2 bits (55), Expect = 4.4
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -3
Query: 456 FLLASTSSLHPFS*VPWILKTHSWDCSLR 370
FLL S L F PW++K+ S D S R
Sbjct: 548 FLLVSLLRLRQFCCHPWLVKSSSLDNSFR 576
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 26.2 bits (55), Expect = 4.4
Identities = 11/40 (27%), Positives = 23/40 (57%)
Frame = +1
Query: 118 LQELASQLLEKTENTSEQVIAESRVSTKLKFPNQKHKTIQ 237
++ L QLL+ +++E ++ + LK +KH+TI+
Sbjct: 3656 IRSLQEQLLKTLCSSNENIVGTDEIVVLLKNLKEKHETIR 3695
>SPBC16A3.11 |eso1||sister chromatid cohesion protein
Eso1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 872
Score = 25.8 bits (54), Expect = 5.8
Identities = 16/49 (32%), Positives = 28/49 (57%)
Frame = +1
Query: 25 YKAADITSEDSSTAVPNAPKVLKSKEPIGDALQELASQLLEKTENTSEQ 171
Y I SEDS+ A+P AP +L E G ++E +++++T+ E+
Sbjct: 165 YPYLKIPSEDSNVALPQAPVLLWPAE-FGMVIEE---EVVDRTKEDYER 209
>SPCC757.02c |||epimarase |Schizosaccharomyces pombe|chr 3|||Manual
Length = 405
Score = 25.4 bits (53), Expect = 7.7
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = -3
Query: 195 GYSAFSDYLFGRVLGFLEQLAG*FLKGISDRFLGFENFR 79
G AF D+LFGR + ++ G +D + F+ F+
Sbjct: 352 GTWAFCDFLFGRTYNVISSMSKARKLGYTDYYDTFDGFK 390
>SPAC17G8.13c |mst2||histone acetyltransferase
Mst2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 407
Score = 25.4 bits (53), Expect = 7.7
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = -2
Query: 409 VDTEDTFVGLLTKTQVD 359
+++E TF+GLLTK Q D
Sbjct: 37 LNSESTFLGLLTKGQAD 53
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,414,684
Number of Sequences: 5004
Number of extensions: 45114
Number of successful extensions: 159
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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