Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30763
         (680 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0146 + 15720790-15721194,15721350-15721446,15721663-157219...    31   0.84 
03_05_0020 + 19873173-19873949                                         30   2.0  
03_01_0270 - 2085461-2086205,2086260-2086339,2086598-2086690,208...    30   2.0  
01_06_0230 + 27718840-27720188,27720983-27721174,27721488-277215...    29   4.5  

>02_03_0146 +
           15720790-15721194,15721350-15721446,15721663-15721928,
           15721997-15722437
          Length = 402

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
 Frame = +1

Query: 88  LKSKEPIGDALQELASQL-LEKTENTSEQVIAESRVSTKLKFPNQKHKTIQ-NEDDAFIM 261
           LK K+  G   QE  + L  +K    S Q+   +    +L     K K IQ  +D    M
Sbjct: 245 LKGKQMEGKETQEAEASLGKDKGRGESSQIQYYTPAKIELLAKEDKKKAIQIMQDREIAM 304

Query: 262 GMQERQFPSQSKILK 306
            +QE++   Q K+LK
Sbjct: 305 AIQEKEEKEQHKVLK 319


>03_05_0020 + 19873173-19873949
          Length = 258

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 10/44 (22%), Positives = 27/44 (61%)
 Frame = +1

Query: 112 DALQELASQLLEKTENTSEQVIAESRVSTKLKFPNQKHKTIQNE 243
           + ++E+    +E+T+N  +++  ++R +T +  P+   + +QNE
Sbjct: 3   NGIEEIFKDSIERTKNRIDEISRDTRNNTNIVMPSTMSELLQNE 46


>03_01_0270 -
           2085461-2086205,2086260-2086339,2086598-2086690,
           2086774-2086881,2087012-2087101,2087234-2087275,
           2087516-2087587,2090848-2090985,2091074-2092624
          Length = 972

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = +3

Query: 225 QNNTKRRRCFYNGHAGEAVPITIEDLETENASDVINDSATTKEGI 359
           QN    RR   +G A    P++I+D+ +       +++  TKEG+
Sbjct: 6   QNEKDSRRITSDGTAARTRPLSIQDIMSRREKKTASEAKKTKEGL 50


>01_06_0230 +
           27718840-27720188,27720983-27721174,27721488-27721569,
           27721651-27721839,27721964-27722077,27722470-27722560,
           27722632-27722789,27723401-27723826,27724355-27724727,
           27725075-27725238
          Length = 1045

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 18/50 (36%), Positives = 28/50 (56%)
 Frame = +1

Query: 61  TAVPNAPKVLKSKEPIGDALQELASQLLEKTENTSEQVIAESRVSTKLKF 210
           T V N P+VL+ +  + D +Q+LAS+L     NT E   ++     K+KF
Sbjct: 427 TDVRNRPRVLQME--LEDRIQKLASRLNATDVNTPEWKFSKMIHDAKIKF 474


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,769,291
Number of Sequences: 37544
Number of extensions: 261187
Number of successful extensions: 731
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 719
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 731
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)