Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30763
(680 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_44903| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.070
SB_11774| Best HMM Match : M (HMM E-Value=8.5e-09) 31 0.65
SB_22059| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_25169| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_41429| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.6
SB_44886| Best HMM Match : zf-C3HC4 (HMM E-Value=1.3e-06) 28 6.1
SB_26677| Best HMM Match : AT_hook (HMM E-Value=3.1) 28 6.1
SB_42894| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.0
SB_8305| Best HMM Match : Plasmodium_HRP (HMM E-Value=8.8) 28 8.0
SB_52686| Best HMM Match : UPF0233 (HMM E-Value=1.1) 28 8.0
>SB_44903| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1281
Score = 34.7 bits (76), Expect = 0.070
Identities = 17/51 (33%), Positives = 25/51 (49%)
Frame = +3
Query: 195 HKTKVSKSETQNNTKRRRCFYNGHAGEAVPITIEDLETENASDVINDSATT 347
HK K++ + NT C NGH G A+ + L+ + DV+ND T
Sbjct: 393 HKAKINVKDCHGNTPLHFCCINGHVGPAIVL----LQCKANVDVVNDRGNT 439
>SB_11774| Best HMM Match : M (HMM E-Value=8.5e-09)
Length = 1998
Score = 31.5 bits (68), Expect = 0.65
Identities = 16/48 (33%), Positives = 28/48 (58%)
Frame = +1
Query: 31 AADITSEDSSTAVPNAPKVLKSKEPIGDALQELASQLLEKTENTSEQV 174
A +T + T P P + +E IG ++LA++LLE EN++E++
Sbjct: 1062 ATTVTVTEEETRKPRQPAIRTLQEKIG---KDLATELLEMDENSAEEL 1106
>SB_22059| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 280
Score = 29.5 bits (63), Expect = 2.6
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -1
Query: 293 DCDGNCLSCMPIIKASSSFCIVLCF*FGNFSFVDTLL 183
D D ++C P+ K SS +V+C F + D LL
Sbjct: 116 DSDHYTITCRPVPKTSSERALVICGFFATYLIPDVLL 152
>SB_25169| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 127
Score = 29.1 bits (62), Expect = 3.5
Identities = 19/41 (46%), Positives = 24/41 (58%)
Frame = +3
Query: 120 SRTSQPTARENREHVRTSNR*KQSIHKTKVSKSETQNNTKR 242
S T + T+ ENR + R + QS TK S SE Q+NTKR
Sbjct: 13 SNTKRNTS-ENRSNTRRNTSENQS--NTKRSTSENQSNTKR 50
>SB_41429| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 732
Score = 28.7 bits (61), Expect = 4.6
Identities = 19/54 (35%), Positives = 32/54 (59%)
Frame = +1
Query: 7 SSRSTSYKAADITSEDSSTAVPNAPKVLKSKEPIGDALQELASQLLEKTENTSE 168
S ++++ KAA+ +SE S + APK K + P+ A Q S+ +K E++SE
Sbjct: 109 SGKNSAKKAAESSSESESESEEEAPK--KKEAPV--AKQNGKSKKAKKEESSSE 158
>SB_44886| Best HMM Match : zf-C3HC4 (HMM E-Value=1.3e-06)
Length = 406
Score = 28.3 bits (60), Expect = 6.1
Identities = 24/97 (24%), Positives = 40/97 (41%), Gaps = 5/97 (5%)
Frame = +1
Query: 37 DITSEDSSTAVPNAPKVLKSKEPIGDALQELASQLLEKTENTSEQV-----IAESRVSTK 201
D+ + + NA + + + LQE L EKT E+ + E VS K
Sbjct: 212 DLHKRKAVESAQNAQDLKIRLDALQQQLQEAQDGLNEKTRCVEEEAFRAKRVQEECVSLK 271
Query: 202 LKFPNQKHKTIQNEDDAFIMGMQERQFPSQSKILKLR 312
K QK + D ++ + RQ+ +Q +L +R
Sbjct: 272 RKLEKQKKIDLYGAADEVLL-EEVRQYKTQRSVLHVR 307
>SB_26677| Best HMM Match : AT_hook (HMM E-Value=3.1)
Length = 355
Score = 28.3 bits (60), Expect = 6.1
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +3
Query: 117 PSRTSQPT-ARENREHVRTSNR*KQSIHKTKVSKSETQNNTKRR 245
P + S+ T R+ R+ + + R +Q+ KTK+SK + QN R
Sbjct: 310 PRQASRKTKTRKPRDQDKKAARPRQASRKTKISKPQDQNKQAAR 353
>SB_42894| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 533
Score = 27.9 bits (59), Expect = 8.0
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -1
Query: 512 SHNWTFSLILVRRSFFIFISCW 447
SH W F+LI+ FF+F + W
Sbjct: 413 SHIWIFTLIIWINVFFLFFASW 434
>SB_8305| Best HMM Match : Plasmodium_HRP (HMM E-Value=8.8)
Length = 366
Score = 27.9 bits (59), Expect = 8.0
Identities = 12/42 (28%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = +3
Query: 117 PSRTSQPTARENREHVRTSNR*KQSIHKTKVSK--SETQNNT 236
P+ T+ PT + + H++ +N + H T+ K ++T N T
Sbjct: 234 PNNTNNPTTQTTKRHIQHNNTYNPTAHTTQQPKQPNDTYNTT 275
>SB_52686| Best HMM Match : UPF0233 (HMM E-Value=1.1)
Length = 189
Score = 27.9 bits (59), Expect = 8.0
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +2
Query: 71 LMHLKFSNPRNRSEMPFKN*PANCSR 148
L +L S P SE PF+ P NC R
Sbjct: 39 LWYLSISYPPQNSETPFRTDPLNCFR 64
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,789,917
Number of Sequences: 59808
Number of extensions: 322397
Number of successful extensions: 1034
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 921
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1031
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1757375282
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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