Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30763
         (680 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g04020.1 68418.m00382 calmodulin-binding protein-related (PIC...    33   0.17 
At5g25420.1 68418.m03016 xanthine/uracil permease family protein...    31   0.53 
At3g18670.1 68416.m02371 ankyrin repeat family protein contains ...    31   0.71 
At1g65550.1 68414.m07436 xanthine/uracil permease family protein...    31   0.71 
At1g08220.1 68414.m00908 expressed protein                             30   1.6  
At1g76810.1 68414.m08938 eukaryotic translation initiation facto...    29   3.8  
At5g40450.1 68418.m04905 expressed protein                             28   5.0  
At1g20370.1 68414.m02541 tRNA pseudouridine synthase family prot...    27   8.7  

>At5g04020.1 68418.m00382 calmodulin-binding protein-related (PICBP)
           contains similarity to potato calmodulin-binding protein
           PCBP GI:17933110 from [Solanum tuberosum]
          Length = 1495

 Score = 33.1 bits (72), Expect = 0.17
 Identities = 16/56 (28%), Positives = 34/56 (60%)
 Frame = +1

Query: 1   NISSRSTSYKAADITSEDSSTAVPNAPKVLKSKEPIGDALQELASQLLEKTENTSE 168
           N++  ++S+ + D+ S++ +  V N+P + +  E   D L+ + ++ LE+T  TSE
Sbjct: 651 NLTCEASSFLSIDMKSDEENETV-NSPTIWRDNEDTTDLLEVVPAKDLEETNLTSE 705


>At5g25420.1 68418.m03016 xanthine/uracil permease family protein
           contains Pfam profile: PF00860 permease family
          Length = 419

 Score = 31.5 bits (68), Expect = 0.53
 Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = -1

Query: 356 TFLGSSRVIDHITG-ILSFKIFDCDGNCLSCMPIIKASSSFCIVLCF 219
           T +GS RVI      +L F IF   G   + +P+   +S +CIVLCF
Sbjct: 307 TKVGSRRVIQISAAFMLFFSIFGKFGAFFASIPLPIMASLYCIVLCF 353


>At3g18670.1 68416.m02371 ankyrin repeat family protein contains
           ankyrin repeats, Pfam domain PF00023
          Length = 598

 Score = 31.1 bits (67), Expect = 0.71
 Identities = 21/61 (34%), Positives = 32/61 (52%)
 Frame = -2

Query: 352 SLVVAESLITSLAFSVSRSSIVMGTASPACPL*KHRLRFVLFCVSDLETLVLWILCFQRL 173
           S  V  +LIT++ FS S  ++  G  S   PL  H+ RF +F +SD   + L+  C   L
Sbjct: 441 SCTVVAALITTMMFS-SAFTVPGGYRSDGMPLYIHQHRFKIFLISD--AISLFTSCMSLL 497

Query: 172 L 170
           +
Sbjct: 498 M 498


>At1g65550.1 68414.m07436 xanthine/uracil permease family protein
           contains Pfam profile: PF00860 permease family
          Length = 541

 Score = 31.1 bits (67), Expect = 0.71
 Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = -1

Query: 356 TFLGSSRVIDHITG-ILSFKIFDCDGNCLSCMPIIKASSSFCIVLCF 219
           T +GS RVI      ++ F IF   G   + +P+   +S +CIVLCF
Sbjct: 370 TKIGSRRVIQISAAFMIFFSIFGKFGAFFASIPLPIMASLYCIVLCF 416


>At1g08220.1 68414.m00908 expressed protein
          Length = 323

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 19/72 (26%), Positives = 35/72 (48%)
 Frame = -2

Query: 367 QVDIPSLVVAESLITSLAFSVSRSSIVMGTASPACPL*KHRLRFVLFCVSDLETLVLWIL 188
           +VD  SLVV +  +  L+F  S   ++   + P      +R    LF VS ++  +L + 
Sbjct: 179 EVDTESLVVPKVSLVCLSFRASSQEMISSWSKPFLESFGNRKDLQLFEVSFIDKWLLGLA 238

Query: 187 CFQRLLVRTCSR 152
             ++LL+R   +
Sbjct: 239 PIRKLLLRVLQK 250


>At1g76810.1 68414.m08938 eukaryotic translation initiation factor 2
           family protein / eIF-2 family protein similar to IF2
           protein [Drosophila melanogaster] GI:7108770; contains
           Pfam profile PF03144: Elongation factor Tu domain 2
          Length = 1294

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 3/81 (3%)
 Frame = +1

Query: 16  STSYKAADITSEDSSTAVPNAPKVLKSKEPIGDALQELASQLLE---KTENTSEQVIAES 186
           S S    +   ++ S  V  + K   SK+  G  L  +    +    KT +T    + E+
Sbjct: 222 SNSRDDENTIEDEESPEVTFSGKKKSSKKKGGSVLASVGDDSVADETKTSDTKNVEVVET 281

Query: 187 RVSTKLKFPNQKHKTIQNEDD 249
             S K K  N+  +T+Q E+D
Sbjct: 282 GKSKKKKKNNKSGRTVQEEED 302


>At5g40450.1 68418.m04905 expressed protein
          Length = 2910

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 18/59 (30%), Positives = 30/59 (50%)
 Frame = +1

Query: 1    NISSRSTSYKAADITSEDSSTAVPNAPKVLKSKEPIGDALQELASQLLEKTENTSEQVI 177
            N +   TS  + D+  +   +     PK  +SKE   D  QE+ S+ +E+ E TS+Q +
Sbjct: 1776 NDNETQTSKTSEDVCMQQEESGTLEVPKPEESKE---DKSQEI-SETIEEIEATSDQTL 1830


>At1g20370.1 68414.m02541 tRNA pseudouridine synthase family protein
           similar to SP|Q9WU56 tRNA pseudouridine synthase A (EC
           4.2.1.70) (Uracil hydrolyase) {Mus musculus}; contains
           Pfam profile PF01416: tRNA pseudouridine synthase
          Length = 549

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 24/93 (25%), Positives = 43/93 (46%)
 Frame = +1

Query: 1   NISSRSTSYKAADITSEDSSTAVPNAPKVLKSKEPIGDALQELASQLLEKTENTSEQVIA 180
           +ISS +     AD+  E  S++VP+A   L S+   G  +  L+S    K E      + 
Sbjct: 236 DISSSTCDAIGADVKCETLSSSVPSAENNLNSEVLDGADVSALSS----KAEG-----ME 286

Query: 181 ESRVSTKLKFPNQKHKTIQNEDDAFIMGMQERQ 279
           ES    K++  N + + +   +  F  G +E++
Sbjct: 287 ESNTLAKVEMNNGEGEDMTKSESKFCYGEKEKE 319


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,390,554
Number of Sequences: 28952
Number of extensions: 228167
Number of successful extensions: 735
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 713
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 735
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1438152744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)