BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdS30763 (680 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At5g04020.1 68418.m00382 calmodulin-binding protein-related (PIC... 33 0.17 At5g25420.1 68418.m03016 xanthine/uracil permease family protein... 31 0.53 At3g18670.1 68416.m02371 ankyrin repeat family protein contains ... 31 0.71 At1g65550.1 68414.m07436 xanthine/uracil permease family protein... 31 0.71 At1g08220.1 68414.m00908 expressed protein 30 1.6 At1g76810.1 68414.m08938 eukaryotic translation initiation facto... 29 3.8 At5g40450.1 68418.m04905 expressed protein 28 5.0 At1g20370.1 68414.m02541 tRNA pseudouridine synthase family prot... 27 8.7 >At5g04020.1 68418.m00382 calmodulin-binding protein-related (PICBP) contains similarity to potato calmodulin-binding protein PCBP GI:17933110 from [Solanum tuberosum] Length = 1495 Score = 33.1 bits (72), Expect = 0.17 Identities = 16/56 (28%), Positives = 34/56 (60%) Frame = +1 Query: 1 NISSRSTSYKAADITSEDSSTAVPNAPKVLKSKEPIGDALQELASQLLEKTENTSE 168 N++ ++S+ + D+ S++ + V N+P + + E D L+ + ++ LE+T TSE Sbjct: 651 NLTCEASSFLSIDMKSDEENETV-NSPTIWRDNEDTTDLLEVVPAKDLEETNLTSE 705 >At5g25420.1 68418.m03016 xanthine/uracil permease family protein contains Pfam profile: PF00860 permease family Length = 419 Score = 31.5 bits (68), Expect = 0.53 Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 1/47 (2%) Frame = -1 Query: 356 TFLGSSRVIDHITG-ILSFKIFDCDGNCLSCMPIIKASSSFCIVLCF 219 T +GS RVI +L F IF G + +P+ +S +CIVLCF Sbjct: 307 TKVGSRRVIQISAAFMLFFSIFGKFGAFFASIPLPIMASLYCIVLCF 353 >At3g18670.1 68416.m02371 ankyrin repeat family protein contains ankyrin repeats, Pfam domain PF00023 Length = 598 Score = 31.1 bits (67), Expect = 0.71 Identities = 21/61 (34%), Positives = 32/61 (52%) Frame = -2 Query: 352 SLVVAESLITSLAFSVSRSSIVMGTASPACPL*KHRLRFVLFCVSDLETLVLWILCFQRL 173 S V +LIT++ FS S ++ G S PL H+ RF +F +SD + L+ C L Sbjct: 441 SCTVVAALITTMMFS-SAFTVPGGYRSDGMPLYIHQHRFKIFLISD--AISLFTSCMSLL 497 Query: 172 L 170 + Sbjct: 498 M 498 >At1g65550.1 68414.m07436 xanthine/uracil permease family protein contains Pfam profile: PF00860 permease family Length = 541 Score = 31.1 bits (67), Expect = 0.71 Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 1/47 (2%) Frame = -1 Query: 356 TFLGSSRVIDHITG-ILSFKIFDCDGNCLSCMPIIKASSSFCIVLCF 219 T +GS RVI ++ F IF G + +P+ +S +CIVLCF Sbjct: 370 TKIGSRRVIQISAAFMIFFSIFGKFGAFFASIPLPIMASLYCIVLCF 416 >At1g08220.1 68414.m00908 expressed protein Length = 323 Score = 29.9 bits (64), Expect = 1.6 Identities = 19/72 (26%), Positives = 35/72 (48%) Frame = -2 Query: 367 QVDIPSLVVAESLITSLAFSVSRSSIVMGTASPACPL*KHRLRFVLFCVSDLETLVLWIL 188 +VD SLVV + + L+F S ++ + P +R LF VS ++ +L + Sbjct: 179 EVDTESLVVPKVSLVCLSFRASSQEMISSWSKPFLESFGNRKDLQLFEVSFIDKWLLGLA 238 Query: 187 CFQRLLVRTCSR 152 ++LL+R + Sbjct: 239 PIRKLLLRVLQK 250 >At1g76810.1 68414.m08938 eukaryotic translation initiation factor 2 family protein / eIF-2 family protein similar to IF2 protein [Drosophila melanogaster] GI:7108770; contains Pfam profile PF03144: Elongation factor Tu domain 2 Length = 1294 Score = 28.7 bits (61), Expect = 3.8 Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 3/81 (3%) Frame = +1 Query: 16 STSYKAADITSEDSSTAVPNAPKVLKSKEPIGDALQELASQLLE---KTENTSEQVIAES 186 S S + ++ S V + K SK+ G L + + KT +T + E+ Sbjct: 222 SNSRDDENTIEDEESPEVTFSGKKKSSKKKGGSVLASVGDDSVADETKTSDTKNVEVVET 281 Query: 187 RVSTKLKFPNQKHKTIQNEDD 249 S K K N+ +T+Q E+D Sbjct: 282 GKSKKKKKNNKSGRTVQEEED 302 >At5g40450.1 68418.m04905 expressed protein Length = 2910 Score = 28.3 bits (60), Expect = 5.0 Identities = 18/59 (30%), Positives = 30/59 (50%) Frame = +1 Query: 1 NISSRSTSYKAADITSEDSSTAVPNAPKVLKSKEPIGDALQELASQLLEKTENTSEQVI 177 N + TS + D+ + + PK +SKE D QE+ S+ +E+ E TS+Q + Sbjct: 1776 NDNETQTSKTSEDVCMQQEESGTLEVPKPEESKE---DKSQEI-SETIEEIEATSDQTL 1830 >At1g20370.1 68414.m02541 tRNA pseudouridine synthase family protein similar to SP|Q9WU56 tRNA pseudouridine synthase A (EC 4.2.1.70) (Uracil hydrolyase) {Mus musculus}; contains Pfam profile PF01416: tRNA pseudouridine synthase Length = 549 Score = 27.5 bits (58), Expect = 8.7 Identities = 24/93 (25%), Positives = 43/93 (46%) Frame = +1 Query: 1 NISSRSTSYKAADITSEDSSTAVPNAPKVLKSKEPIGDALQELASQLLEKTENTSEQVIA 180 +ISS + AD+ E S++VP+A L S+ G + L+S K E + Sbjct: 236 DISSSTCDAIGADVKCETLSSSVPSAENNLNSEVLDGADVSALSS----KAEG-----ME 286 Query: 181 ESRVSTKLKFPNQKHKTIQNEDDAFIMGMQERQ 279 ES K++ N + + + + F G +E++ Sbjct: 287 ESNTLAKVEMNNGEGEDMTKSESKFCYGEKEKE 319 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 12,390,554 Number of Sequences: 28952 Number of extensions: 228167 Number of successful extensions: 735 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 713 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 735 length of database: 12,070,560 effective HSP length: 79 effective length of database: 9,783,352 effective search space used: 1438152744 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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