Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30761
         (760 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP8A3.02c |||2 OG-Fe|Schizosaccharomyces pombe|chr 1|||Manual        29   0.95 
SPAC57A10.12c |ura3||dihydroorotate dehydrogenase Ura3|Schizosac...    26   6.7  
SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|c...    26   6.7  
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9...    25   8.9  

>SPAP8A3.02c |||2 OG-Fe|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 225

 Score = 28.7 bits (61), Expect = 0.95
 Identities = 10/37 (27%), Positives = 21/37 (56%)
 Frame = +3

Query: 30  IIRVTTVRQYSSLSRCLPNAVDASPVNNIPPDA*SLF 140
           ++ V T+   +    CLP +V  + +NN+P +  S++
Sbjct: 42  VVPVETIEGINYYPNCLPESVQRNLINNVPKELLSIY 78


>SPAC57A10.12c |ura3||dihydroorotate dehydrogenase
           Ura3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 443

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = +3

Query: 582 DAIAALKTCQVDGKTYREGEIFEPQNTRKTASVHPTG 692
           D    LK C++DG       +  P+  + T+ V  TG
Sbjct: 318 DIADVLKKCKIDGVIVGNTTVQRPKTLKSTSHVEETG 354


>SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 801

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = +3

Query: 111 NIPPDA*SLFKLFHLKFVWNKID-NESAF 194
           ++  D   +F   HL F+WN  D N +AF
Sbjct: 296 SVDADMNPVFSFEHLSFIWNYFDANSNAF 324


>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
           Srb9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1223

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -2

Query: 123 PVEYCLLETRLPHLADSDLMTNIDEL 46
           P+E C LET    + D  L +N+ +L
Sbjct: 291 PLELCFLETSALRMNDDSLSSNLTDL 316


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,211,905
Number of Sequences: 5004
Number of extensions: 69400
Number of successful extensions: 183
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)