Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30761
         (760 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0156 - 1048689-1049567                                           30   1.7  
12_01_0079 + 644754-645932,645966-646061,646193-647122                 30   2.3  
11_01_0078 + 609005-610183,610217-610312,610444-611373                 30   2.3  
04_04_0839 - 28565732-28565908,28566380-28566544,28566656-285667...    29   3.0  
03_02_0627 + 9951391-9951523,9951615-9951684,9951829-9951856,995...    29   5.3  
09_04_0473 - 17906802-17907964,17908175-17908871,17910323-17910784     28   7.0  
02_04_0129 + 20020388-20021215                                         28   7.0  
03_01_0360 + 2815067-2816033,2816120-2816198,2816275-2816342,281...    28   9.3  
01_01_0213 + 1833221-1835062,1835429-1835558,1835726-1836411           28   9.3  

>05_01_0156 - 1048689-1049567
          Length = 292

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +1

Query: 229 DMAGECNMSLFTWSSAVLLSRAWTTRQYAQT 321
           DM+  C    ++WS  + L + WT+R+Y ++
Sbjct: 104 DMSKVCAAKKYSWSKRLKLMKRWTSREYIKS 134


>12_01_0079 + 644754-645932,645966-646061,646193-647122
          Length = 734

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +2

Query: 677 CTSDWSDSADNSAYCRDIDCGLEIHYQG 760
           CT DW ++A + AY  D+ C  +  Y G
Sbjct: 130 CTQDWPNAAGDPAYWLDLRCSSDNLYSG 157


>11_01_0078 + 609005-610183,610217-610312,610444-611373
          Length = 734

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +2

Query: 677 CTSDWSDSADNSAYCRDIDCGLEIHYQG 760
           CT DW ++A + AY  D+ C  +  Y G
Sbjct: 130 CTQDWPNAAGDPAYWLDLRCSSDNLYSG 157


>04_04_0839 -
           28565732-28565908,28566380-28566544,28566656-28566788,
           28566888-28567007,28568361-28568740
          Length = 324

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +2

Query: 650 APEHKEDCICTSDWSDSADNSAYCRDIDCGLEIH 751
           APE  E CIC S + D A+     R++ CG   H
Sbjct: 262 APEDAECCICLSAYDDGAE----LRELPCGHHFH 291


>03_02_0627 +
           9951391-9951523,9951615-9951684,9951829-9951856,
           9952208-9952254,9952366-9952456,9952738-9952915,
           9953626-9953713,9953788-9953869,9954195-9954270,
           9954429-9954496,9954623-9954692,9955469-9955553,
           9955671-9955764,9956289-9956372
          Length = 397

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 13/42 (30%), Positives = 18/42 (42%)
 Frame = +3

Query: 279 TPIPSVDNTTICPDAFKCPDLHPDPTMCYYRGASYTDRSPLP 404
           TP P  +      D F+C D     T+  +   SY   +PLP
Sbjct: 26  TPWPEFNEGISYIDTFRCADAGATTTLIEFYSTSYKSSAPLP 67


>09_04_0473 - 17906802-17907964,17908175-17908871,17910323-17910784
          Length = 773

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = +3

Query: 318 DAFKCPDLHPDPTMCYYRGASYTDRSPLPQNLIKNPCSQACS 443
           D  +C D HP   +C     SYT      ++LI   C Q+ S
Sbjct: 338 DIDECQDAHPCTGICINTQGSYTCTCQRGKHLIDGVCKQSSS 379


>02_04_0129 + 20020388-20021215
          Length = 275

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = -2

Query: 657 SGARKSPPPYTFCRPLGRFLTLRLRPCPQTFAVLQHESNSY 535
           +GA  +PPP     P    L+    P P TF+V++  S+++
Sbjct: 232 AGAAAAPPPPFAPSPRSLLLSTPTMPSPATFSVMEFFSSNF 272


>03_01_0360 +
           2815067-2816033,2816120-2816198,2816275-2816342,
           2817382-2817464,2821566-2823083
          Length = 904

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +3

Query: 447 RISDGEPQFDCAAVDCVESFDPTSRSASKRTNWTH 551
           R+  GE  + C+A DC +SF   S  +  R  + H
Sbjct: 869 RVHTGERPYKCSAPDCGQSFRYVSDYSRHRKKFNH 903


>01_01_0213 + 1833221-1835062,1835429-1835558,1835726-1836411
          Length = 885

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 22/84 (26%), Positives = 39/84 (46%)
 Frame = +3

Query: 495 VESFDPTSRSASKRTNWTHVAAQQMSAGKDAIAALKTCQVDGKTYREGEIFEPQNTRKTA 674
           V S  P + SA +  + +  AA   S  +  +    T Q   +    G     +NTR++ 
Sbjct: 360 VSSTHPAAGSARELMSGSRRAAHHGSGQRRELMGTITPQRSSRREVMGSSNPQRNTRRS- 418

Query: 675 SVHPTGVTQRTTQLIAETSIAA*K 746
           S+  +G+T  TT  IA ++++  K
Sbjct: 419 SIDRSGLTSTTTSRIAVSTVSGQK 442


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,240,617
Number of Sequences: 37544
Number of extensions: 518538
Number of successful extensions: 1420
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1370
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1420
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)