Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30761
         (760 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.3  
SB_39806| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.8  
SB_39292| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_17384| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     29   5.4  
SB_14111| Best HMM Match : WD40 (HMM E-Value=6.2e-30)                  28   7.2  
SB_31729| Best HMM Match : RVT_1 (HMM E-Value=0.023)                   28   9.5  

>SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4529

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 28/113 (24%), Positives = 51/113 (45%), Gaps = 5/113 (4%)
 Frame = +3

Query: 393  SPLPQNLIKNPCSQACSCRISDGEPQFDCAAVDCVESF--DPTSRSASKRTNWTHVAAQQ 566
            SPLP NL     S++ S   S+ + Q + + V    S   + TS++         ++ + 
Sbjct: 3397 SPLPTNLEIGNASKSVSTVKSEEQEQSEASCVQSSSSICEENTSKNNDDCAKQGTLSDRV 3456

Query: 567  MSAGKDAIAALKTCQVDGKTYREGEIFEPQNTRKTASV---HPTGVTQRTTQL 716
            +S  + A A  KT Q   +  ++ EI   Q    TA++    PT +T+ +  +
Sbjct: 3457 LSDDQAAKAVSKTNQDSQQIEQDKEIVSSQEPNDTATMIQQDPTSITRESDSI 3509


>SB_39806| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 184

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +3

Query: 630 REGEIFEPQNTRKTASVHPTGVTQRTTQLIAETS 731
           R   I  PQ T+ TA++   G T+RT  L+ ETS
Sbjct: 148 RSSGISIPQGTQITATLTNGGTTRRTVSLVGETS 181


>SB_39292| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 707

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 11/32 (34%), Positives = 22/32 (68%)
 Frame = +2

Query: 302 HDNMPRRVQMSRSTSRPNDVLLQRRVIYGSVT 397
           H ++PR ++++R   RP+D+  + RV +G V+
Sbjct: 339 HPHLPRIIELARLGVRPSDISRRLRVSHGCVS 370


>SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 5222

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 16/58 (27%), Positives = 21/58 (36%)
 Frame = +3

Query: 312  CPDAFKCPDLHPDPTMCYYRGASYTDRSPLPQNLIKNPCSQACSCRISDGEPQFDCAA 485
            CP  F CP     PT C     ++ + + L      N CS    C      P   C+A
Sbjct: 1944 CPMGFYCPQGSSSPTQC--EAGTFGNSTKLKSQSECNDCSPGFYCSPPTIYPNLKCSA 1999


>SB_17384| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 425

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = -2

Query: 243 FARHVRRHRDE*NNK*EKHFHCRFCSTRISNGII*IRTMR 124
           FA+   R++ E ++  EK F+C++C    S     +R MR
Sbjct: 354 FAQSSTRNKHELSHSREKPFNCKYCDRSFSQSSTVLRHMR 393


>SB_14111| Best HMM Match : WD40 (HMM E-Value=6.2e-30)
          Length = 1093

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +3

Query: 603 TCQVDGKTYREGEIFEPQNTRK-TASVHPTGVTQRTTQLIAET 728
           TC +DG   +  EI++   TRK TA   PT       Q++A +
Sbjct: 468 TCPLDGNCLQSSEIYQATVTRKETAPQKPTYFLSGIQQVVARS 510


>SB_31729| Best HMM Match : RVT_1 (HMM E-Value=0.023)
          Length = 423

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
 Frame = -1

Query: 592 AIASLPADICCAAT*VQFVRFDALLEVGSKDSTQSTAAQSNCGSPSEMRQLHA-WEHGFL 416
           A + LP + CCA T  +       L+ G      S  A++      E  ++ A W+ G+L
Sbjct: 33  ADSDLPIE-CCAPTKEEICSAIKQLKNGKSAGPDSIPAEALKADIWEEEEVPAEWKEGYL 91

Query: 415 IRFCGKGDRS 386
           I+   KGD S
Sbjct: 92  IKLPKKGDLS 101


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,364,904
Number of Sequences: 59808
Number of extensions: 583456
Number of successful extensions: 1772
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1524
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1771
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2070332524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)