Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30761
         (760 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    25   0.77 
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    22   7.2  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    21   9.5  

>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 25.0 bits (52), Expect = 0.77
 Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
 Frame = -1

Query: 676 DAVFLVF--WGSKISPSLYVLPSTWQVFNAAIASLPA 572
           DA ++V+   GS   P L +L   W+++NAA+++  A
Sbjct: 244 DAGYVVYSALGSFYIPMLVMLFFYWRIYNAAVSTTKA 280


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
 Frame = +3

Query: 375 ASYTDRSPL--PQNLIKNPCSQACSCRISDGEPQFDCAAVDCVESF 506
           A+Y D + +  PQN  +N    A    + +  P+F    + C+  F
Sbjct: 169 ATYVDINYVEYPQNSKRNSEESAICAMLKENMPEFPLYQLSCILFF 214


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = -2

Query: 246 TFARHVRRHRDE*NNK*EKHFHCRFCSTRIS 154
           TFA   R  R    +  EK + C +CS   S
Sbjct: 100 TFAVPARLTRHYRTHTGEKPYQCEYCSKSFS 130


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 217,049
Number of Sequences: 438
Number of extensions: 4824
Number of successful extensions: 12
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23875740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)