Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30761
(760 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g61830.1 68416.m06941 transcriptional factor B3 family protei... 32 0.48
At4g39080.1 68417.m05534 vacuolar proton ATPase, putative simila... 31 0.63
At2g14455.1 68415.m01618 hypothetical protein 30 1.9
At4g36010.1 68417.m05127 pathogenesis-related thaumatin family p... 29 2.5
At1g24270.1 68414.m03063 hypothetical protein 29 3.4
At2g21410.1 68415.m02548 vacuolar proton ATPase, putative simila... 29 4.4
At4g39580.1 68417.m05596 kelch repeat-containing F-box family pr... 28 7.7
At3g53510.1 68416.m05908 ABC transporter family protein breast c... 28 7.7
At3g46810.1 68416.m05081 DC1 domain-containing protein contains ... 28 7.7
At1g75330.1 68414.m08750 ornithine carbamoyltransferase, chlorop... 28 7.7
At1g35930.1 68414.m04462 replication protein-related weak simila... 28 7.7
>At3g61830.1 68416.m06941 transcriptional factor B3 family protein /
auxin-responsive factor AUX/IAA-related contains Pfam
profile: PF02309 AUX/IAA family
Length = 602
Score = 31.9 bits (69), Expect = 0.48
Identities = 25/75 (33%), Positives = 30/75 (40%), Gaps = 2/75 (2%)
Frame = +3
Query: 318 DAFKCPDLHPDPTMCYYR--GASYTDRSPLPQNLIKNPCSQACSCRISDGEPQFDCAAVD 491
++FK P+ P PT C YR G T SP P D +P C A
Sbjct: 425 NSFK-PETPPPPTNCSYRLFGFDLTSNSPAPIP--------------QDKQPMDTCGAAK 469
Query: 492 CVESFDPTSRSASKR 536
C E PTS S K+
Sbjct: 470 CQEPITPTSMSEQKK 484
>At4g39080.1 68417.m05534 vacuolar proton ATPase, putative similar
to Swiss-Prot:Q93050 vacuolar proton translocating
ATPase 116 kDa subunit A isoform 1 (Clathrin-coated
vesicle/synaptic vesicle proton pump 116 kDa subunit,
Vacuolar proton pump subunit 1, Vacuolar adenosine
triphosphatase subunit Ac116) [Homo sapiens]
Length = 821
Score = 31.5 bits (68), Expect = 0.63
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = -3
Query: 290 RDRSTAELQVKSDMLHSPAMSEDTATNKTINKKSTFIVDFVPHEFQM 150
+ R T Q D+L SP + E+ + + T K F+ VP E M
Sbjct: 158 QQRETESQQAGEDLLESPLLQEEKSIDSTKQVKLGFLTGLVPREKSM 204
>At2g14455.1 68415.m01618 hypothetical protein
Length = 260
Score = 29.9 bits (64), Expect = 1.9
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +3
Query: 285 IPSVDNTTICPDAFKCPDLHPDPTMCYYRGASY 383
I S+D + F C LH DP+ Y+ ASY
Sbjct: 208 IASIDGENVLTSEFGCSRLHIDPSFPYFDLASY 240
>At4g36010.1 68417.m05127 pathogenesis-related thaumatin family
protein similar to receptor serine/threonine kinase PR5K
[Arabidopsis thaliana] GI:1235680; contains Pfam profile
PF00314: Thaumatin family
Length = 301
Score = 29.5 bits (63), Expect = 2.5
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = +3
Query: 417 KNPCSQACSCRISDGEPQFDCAAVDCVESFDPTSRSASK 533
KN C +A S DG F C D V +F P+ + K
Sbjct: 219 KNACPRAYSYAYDDGTSTFTCGGADYVITFCPSPNPSVK 257
>At1g24270.1 68414.m03063 hypothetical protein
Length = 199
Score = 29.1 bits (62), Expect = 3.4
Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
Frame = +3
Query: 435 ACSCRISDGEPQFDCAAVDCVESFDPTSRSASKRTNWTH-VAAQQMSAGKDAIAALKTCQ 611
+C + S P DC DC S+ S+S R + A + +D I+A T +
Sbjct: 114 SCKKKRSHKAPLLDCQCFDCYTSYWSKWDSSSNRELINQIIEAFEDHLTRDEISASHTSK 173
Query: 612 VDGKTYREGEIFEPQNTRKT 671
+ K ++ EI E Q K+
Sbjct: 174 KNKKRAKKIEISEEQPQNKS 193
>At2g21410.1 68415.m02548 vacuolar proton ATPase, putative similar
to vacuolar proton ATPase 100-kDa subunit from
Dictyostelium discoideum P|1384136|gb|AAB49621
Length = 821
Score = 28.7 bits (61), Expect = 4.4
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -3
Query: 266 QVKSDMLHSPAMSEDTATNKTINKKSTFIVDFVPHEFQM 150
QV D+L +P + E+ + + T K F+ VP E M
Sbjct: 167 QVGEDLLEAPLLQEEKSVDPTKQVKLGFLTGLVPREKSM 205
>At4g39580.1 68417.m05596 kelch repeat-containing F-box family
protein contains F-box domain Pfam:PF00646 and Kelch
motif Pfam:PF01344
Length = 375
Score = 27.9 bits (59), Expect = 7.7
Identities = 8/17 (47%), Positives = 14/17 (82%)
Frame = +3
Query: 474 DCAAVDCVESFDPTSRS 524
DC ++DC+E FDP +++
Sbjct: 188 DCTSLDCIEVFDPKTQT 204
>At3g53510.1 68416.m05908 ABC transporter family protein breast
cancer resistance protein (BCRP), Homo sapiens,
EMBL:AF098951
Length = 739
Score = 27.9 bits (59), Expect = 7.7
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = +3
Query: 348 DPTMCYYRGASYTDRSPLPQ 407
DPT C+ RG D SPL Q
Sbjct: 645 DPTKCFVRGIQMFDNSPLGQ 664
>At3g46810.1 68416.m05081 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 686
Score = 27.9 bits (59), Expect = 7.7
Identities = 11/21 (52%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
Frame = -3
Query: 596 RCD-CVLARRHLLCCNMSPIR 537
+CD C + RRHLLCC R
Sbjct: 519 KCDICHITRRHLLCCEECDFR 539
>At1g75330.1 68414.m08750 ornithine carbamoyltransferase,
chloroplast / ornithine transcarbamylase / OTCase (OTC)
identical to SP|O50039 Ornithine carbamoyltransferase,
chloroplast precursor (EC 2.1.3.3) (OTCase) (Ornithine
transcarbamylase) {Arabidopsis thaliana}
Length = 375
Score = 27.9 bits (59), Expect = 7.7
Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
Frame = +2
Query: 194 SYLLFYSSRCLRTWRANVTCRFLLGAR-LYSYPERGQHDNMPRRVQMSRSTSRPNDVLLQ 370
S + ++ +RT + T FLLG LY P Q ++R SR ND+++
Sbjct: 114 SMSMIFAKPSMRTRVSFETGFFLLGGHALYLGPNDIQMGKREETRDVARVLSRYNDIIMA 173
Query: 371 RRVIYGSVTLTAESDQEPVLPGV 439
R + + A PV+ G+
Sbjct: 174 RVFAHQDILDLANYSSVPVVNGL 196
>At1g35930.1 68414.m04462 replication protein-related weak
similarity to Replication Protein A 70 kDa DNA-binding
subunit (RP-A) (RF-A) (Replication factor-A protein 1)
(Single-stranded DNA-binding protein) (DMRPA1)
(GI:2498844)(SP:Q24492) [Drosophila melanogaster]
Length = 261
Score = 27.9 bits (59), Expect = 7.7
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +3
Query: 285 IPSVDNTTICPDAFKCPDLHPDPTMCYYRGAS 380
I SVD + F C LH DP+ Y+ AS
Sbjct: 220 IASVDGENVLKSEFGCSRLHIDPSFPYFDFAS 251
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,197,652
Number of Sequences: 28952
Number of extensions: 384966
Number of successful extensions: 1107
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1052
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1106
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1692519896
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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