Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30760
         (701 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80442-5|AAB37668.2|  794|Caenorhabditis elegans Hypothetical pr...    30   1.8  
Z81513-5|CAB04175.1|  332|Caenorhabditis elegans Hypothetical pr...    29   3.2  
U02289-1|AAA18934.1| 1439|Caenorhabditis elegans GTPase-activati...    27   9.8  
L16687-1|AAK71357.2| 1317|Caenorhabditis elegans Hypothetical pr...    27   9.8  

>U80442-5|AAB37668.2|  794|Caenorhabditis elegans Hypothetical
           protein T20F5.6 protein.
          Length = 794

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +1

Query: 118 DPEAKAEYPRSNKLVIRQALLGPDAKPDELNVIQVEAMSLQ 240
           + EA A   R+ K +   ALL PDA PD  N   ++ + +Q
Sbjct: 690 EAEANANGQRAPKNIEMPALLNPDANPDAPNFKNLQPLQVQ 730


>Z81513-5|CAB04175.1|  332|Caenorhabditis elegans Hypothetical
           protein F26D2.4 protein.
          Length = 332

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = -3

Query: 684 RYNYT*NGDGTTSPKWVSRRFVHFLAFFLGDAA-LPLALFD 565
           RYNY    D T+  + + R   HF+ + L   A LP AL D
Sbjct: 120 RYNYLVRTDSTSQSRKIKRVIQHFINYLLAFLAFLPAALED 160


>U02289-1|AAA18934.1| 1439|Caenorhabditis elegans GTPase-activating
           protein protein.
          Length = 1439

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = +2

Query: 47  VKSS*RTSFSMVSPFHHHISQRHGIQRQKQNTHAATSSS 163
           V SS +T  +  S FHHH SQ  G  R  +N  A T+++
Sbjct: 700 VPSSSQTMATTSSSFHHHSSQA-GPSRDIENGEAPTATA 737


>L16687-1|AAK71357.2| 1317|Caenorhabditis elegans Hypothetical
           protein C04D8.1 protein.
          Length = 1317

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = +2

Query: 47  VKSS*RTSFSMVSPFHHHISQRHGIQRQKQNTHAATSSS 163
           V SS +T  +  S FHHH SQ  G  R  +N  A T+++
Sbjct: 578 VPSSSQTMATTSSSFHHHSSQA-GPSRDIENGEAPTATA 615


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,538,913
Number of Sequences: 27780
Number of extensions: 277950
Number of successful extensions: 679
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 651
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 677
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)