Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30759
         (760 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    24   1.8  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    24   1.8  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    23   2.4  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    22   7.2  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    22   7.2  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    21   9.5  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    21   9.5  

>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 10/33 (30%), Positives = 14/33 (42%)
 Frame = -2

Query: 561 LQYVWFIPQRQFCLPKLATWHRHQISGFIVRVS 463
           + + WF       LP L  W R+   GF+   S
Sbjct: 175 IAFTWFWVTPFTVLPLLKVWGRYTTEGFLTTCS 207


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 10/33 (30%), Positives = 14/33 (42%)
 Frame = -2

Query: 561 LQYVWFIPQRQFCLPKLATWHRHQISGFIVRVS 463
           + + WF       LP L  W R+   GF+   S
Sbjct: 175 IAFTWFWVTPFTVLPLLKVWGRYTTEGFLTTCS 207


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 17/52 (32%), Positives = 25/52 (48%)
 Frame = -3

Query: 488 SPASSFE*AGVLTHLKFENRLRSFRPQCL*SFALPDETVLKFYIDASYPEGN 333
           S A+S E   + TH +  ++LR  R     S  L DE   K +  ++  EGN
Sbjct: 220 STAASDEDISLTTHQQKRHKLRVTRCYSSDSAVLSDEDQTKGWDGSNMVEGN 271


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -3

Query: 296 LSPLYPVPTID 264
           LSP+YP P +D
Sbjct: 71  LSPIYPSPMVD 81


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -3

Query: 296 LSPLYPVPTID 264
           LSP+YP P +D
Sbjct: 71  LSPIYPSPMVD 81


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +1

Query: 718 AYTLPLPARVMLNF 759
           ++ +PLP RV+ NF
Sbjct: 222 SFCIPLPVRVLPNF 235


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +2

Query: 710 NVLPIHYRYRHV 745
           NVL IHY++ H+
Sbjct: 2   NVLHIHYQHYHI 13


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 215,658
Number of Sequences: 438
Number of extensions: 4981
Number of successful extensions: 23
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23875740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)