Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30759
         (760 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g08113.1 68417.m01331 myosin heavy chain-related similar to M...    31   0.83 
At4g07530.1 68417.m01179 hypothetical protein                          31   1.1  
At1g74690.1 68414.m08650 calmodulin-binding family protein low s...    29   2.5  
At4g04070.1 68417.m00576 hypothetical protein low similarity to ...    29   3.4  
At2g42890.2 68415.m05312 RNA recognition motif (RRM)-containing ...    29   3.4  
At2g42890.1 68415.m05311 RNA recognition motif (RRM)-containing ...    29   3.4  
At4g08480.1 68417.m01399 mitogen-activated protein kinase, putat...    29   4.4  
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA...    28   5.9  
At2g27810.2 68415.m03372 xanthine/uracil permease family protein...    28   5.9  
At2g27810.1 68415.m03371 xanthine/uracil permease family protein...    28   5.9  

>At4g08113.1 68417.m01331 myosin heavy chain-related similar to
           Myosin heavy chain, skeletal muscle, extraocular
           (MyHC-eo) (SP:Q9UKX3)  {Homo sapiens}
          Length = 764

 Score = 31.1 bits (67), Expect = 0.83
 Identities = 19/59 (32%), Positives = 24/59 (40%)
 Frame = +2

Query: 566 PKKRSWDTMKGVGRS*QQDGGHGSRNPLRSVQRTSPAEATSPENGWR*NVLPIHYRYRH 742
           P+  +    +  GRS    GG GSR   RS  R+     TS   G      P H+ Y H
Sbjct: 414 PEAAASAARRSSGRS--HGGGRGSRGGGRSSNRSQEVRQTSNSGGGSAGSRPFHWSYNH 470


>At4g07530.1 68417.m01179 hypothetical protein 
          Length = 818

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 24/69 (34%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
 Frame = +2

Query: 539 GMNQTY-CKAPKKRSWDTMKGVGRS*QQDGGHGSRNPLRSVQRTSPAEATSPENGWR*NV 715
           G + TY C +    S D  +  GRS    GG GSR   RS  R+     TS   G     
Sbjct: 436 GEDGTYGCYSGAAASADR-RSSGRS--HGGGRGSRGGGRSSNRSQEVRQTSNSGGGSAGR 492

Query: 716 LPIHYRYRH 742
            P H+ Y H
Sbjct: 493 RPFHWSYTH 501


>At1g74690.1 68414.m08650 calmodulin-binding family protein low
           similarity to SF16 protein [Helianthus annuus]
           GI:560150; contains Pfam profile PF00612: IQ
           calmodulin-binding motif
          Length = 587

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = -3

Query: 509 PLGTVIRSPASSFE*AGVLTHLKFENRLRSFR 414
           P  +V + PAS+FE + V T  +FE   RSFR
Sbjct: 282 PKKSVRKVPASNFESSSVQTSFEFEKPKRSFR 313


>At4g04070.1 68417.m00576 hypothetical protein low similarity to
           protective antigen [Streptococcus pyogenes] GI:8996050,
           fibrinogen-binding protein [Streptococcus equi]
           GI:3093478
          Length = 728

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 18/47 (38%), Positives = 20/47 (42%)
 Frame = +2

Query: 602 GRS*QQDGGHGSRNPLRSVQRTSPAEATSPENGWR*NVLPIHYRYRH 742
           GRS    GG GSR   RS  R+     TS   G      P H+ Y H
Sbjct: 371 GRS--HGGGRGSRVGGRSSNRSQEVRQTSNSGGGSAGSRPFHWSYTH 415


>At2g42890.2 68415.m05312 RNA recognition motif (RRM)-containing
           protein
          Length = 830

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = -3

Query: 560 YNTFGSSHSASSAYQNWPLGTVIR-SPASSF 471
           YN  GS H A+S   NWP+G+ ++ SP+ +F
Sbjct: 367 YNQVGS-HVANSPPGNWPIGSPVKGSPSHAF 396


>At2g42890.1 68415.m05311 RNA recognition motif (RRM)-containing
           protein
          Length = 843

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = -3

Query: 560 YNTFGSSHSASSAYQNWPLGTVIR-SPASSF 471
           YN  GS H A+S   NWP+G+ ++ SP+ +F
Sbjct: 380 YNQVGS-HVANSPPGNWPIGSPVKGSPSHAF 409


>At4g08480.1 68417.m01399 mitogen-activated protein kinase, putative
           similar to mitogen-activated protein kinase [Arabidopsis
           thaliana] gi|1255448|dbj|BAA09057; contains Pfam
           PF00069: Protein kinase domain
          Length = 773

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 17/69 (24%), Positives = 29/69 (42%)
 Frame = -3

Query: 368 KFYIDASYPEGNFGRNQLLDGSISLSPLYPVPTIDLHVESLRSSIRVSPDFDLTRHSSPS 189
           K  +D+   E   G   +    +   P+  +P +DL   S       +PD ++ R  S S
Sbjct: 375 KEVVDSGTVENRRGIKGVRPSVLKPPPVMKLPPVDLPGSSWDILTHFAPDSEIVRRPSSS 434

Query: 188 FGSQHLCSE 162
             S++ C E
Sbjct: 435 SSSENGCDE 443


>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
           helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
          Length = 542

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +1

Query: 208 VRSKSGETLMEDRSDSTCKSIVGTGYRGERLIEPSSSWFRP 330
           V  + G+ +ME  SD      VG   RG    EP S+W++P
Sbjct: 24  VVEEPGKGMMEHLSDKKKLMSVGELARGITYTEPLSTWWKP 64


>At2g27810.2 68415.m03372 xanthine/uracil permease family protein
           contains Pfam profile: PF00860 permease family
          Length = 660

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = +2

Query: 566 PKKRSWDTMKGVGRS*QQDGGHGSRNPLRSVQRTSPAEATSPEN 697
           P KR  D+   VGRS   DG +GS +P+R   R        P++
Sbjct: 114 PVKRRRDSDGVVGRSNGPDGANGSGDPVRRPGRIEETVEVLPQS 157


>At2g27810.1 68415.m03371 xanthine/uracil permease family protein
           contains Pfam profile: PF00860 permease family
          Length = 709

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = +2

Query: 566 PKKRSWDTMKGVGRS*QQDGGHGSRNPLRSVQRTSPAEATSPEN 697
           P KR  D+   VGRS   DG +GS +P+R   R        P++
Sbjct: 114 PVKRRRDSDGVVGRSNGPDGANGSGDPVRRPGRIEETVEVLPQS 157


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,282,038
Number of Sequences: 28952
Number of extensions: 393205
Number of successful extensions: 890
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 874
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 890
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1692519896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)