Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30758
         (776 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       28   0.073
U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.    22   4.8  
AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain tran...    22   4.8  
AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    22   4.8  
AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.           22   4.8  

>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 28.3 bits (60), Expect = 0.073
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +2

Query: 329 LEVPPPITGEQLVDMIRQNLREYVNFERPLHDDEI 433
           L V PP+T E++ +  R+NL+ + N  +     E+
Sbjct: 363 LPVRPPLTREEIHEKARENLKHHANLRQKNQKGEV 397



 Score = 26.6 bits (56), Expect = 0.22
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -2

Query: 211 NNFWRPSLAAGTARPKASPIYHPRSDLS 128
           +N W+ SL A   +P  S I HP S+ S
Sbjct: 270 SNTWQNSLRAADIQPTLSSIRHPESNPS 297


>U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.
          Length = 322

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 9/30 (30%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
 Frame = -2

Query: 637 KNQNESSNFTH---LRYVLLAQPVFQTLIF 557
           KNQN   N+TH   + + +  +P++++  F
Sbjct: 31  KNQNTEQNYTHNNEMYHRVKEEPIYESCRF 60


>AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain
           transcription factor Fushitarazu protein.
          Length = 290

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 9/30 (30%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
 Frame = -2

Query: 637 KNQNESSNFTH---LRYVLLAQPVFQTLIF 557
           KNQN   N+TH   + + +  +P++++  F
Sbjct: 31  KNQNTEQNYTHNNEMYHRVKEEPIYESCRF 60


>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
           transcription factor protein.
          Length = 228

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +2

Query: 236 APRTKDREENQSTTESG 286
           APRT  RE   S ++SG
Sbjct: 122 APRTASRETKSSESDSG 138


>AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.
          Length = 290

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 9/30 (30%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
 Frame = -2

Query: 637 KNQNESSNFTH---LRYVLLAQPVFQTLIF 557
           KNQN   N+TH   + + +  +P++++  F
Sbjct: 31  KNQNTEHNYTHNNEMYHSVKEEPIYESCRF 60


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,476
Number of Sequences: 336
Number of extensions: 3175
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20961338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)