Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30758
(776 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces p... 31 0.18
SPCC338.11c |rrg1|uvi22|methyltransferase |Schizosaccharomyces p... 29 0.74
SPBC4B4.06 |vps25||ESCRT II complex subunit Vps25|Schizosaccharo... 29 0.98
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po... 28 1.3
SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr 1|||M... 26 5.2
SPAC1D4.09c |||DUF602 family protein|Schizosaccharomyces pombe|c... 26 5.2
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ... 26 6.9
SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces po... 26 6.9
SPAC27F1.02c |cdc8|fus4|tropomyosin|Schizosaccharomyces pombe|ch... 25 9.2
SPAC31A2.12 |||arrestin/PY protein 1|Schizosaccharomyces pombe|c... 25 9.2
>SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 31.1 bits (67), Expect = 0.18
Identities = 16/80 (20%), Positives = 42/80 (52%)
Frame = +1
Query: 79 FVAQICKDLPEDTAKLLINPNEDDISVTPLVVLFLQLEMVAKSYLDNRRKTRRAKDKRPR 258
+ ++C ED L++ + D SV+P+ +++ + R K+++ K+K+ +
Sbjct: 99 YAGRLCGTFEED----LVDKSLDS-SVSPVSSKKVKVRKTSGKESSKREKSKKKKEKKEK 153
Query: 259 RESIDNRKRRTQY*GSHTKR 318
++ + + +R + SHT++
Sbjct: 154 KDKLKKKSKRLKLDDSHTQK 173
>SPCC338.11c |rrg1|uvi22|methyltransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 303
Score = 29.1 bits (62), Expect = 0.74
Identities = 13/37 (35%), Positives = 23/37 (62%)
Frame = +1
Query: 25 LSHEKDTSTQVSEALIKIFVAQICKDLPEDTAKLLIN 135
LSHE+ + +Q+ + L KI + DLP+ K+++N
Sbjct: 10 LSHEQPSYSQIKDVLDKIPTGEHLWDLPKYEEKIILN 46
>SPBC4B4.06 |vps25||ESCRT II complex subunit
Vps25|Schizosaccharomyces pombe|chr 2|||Manual
Length = 175
Score = 28.7 bits (61), Expect = 0.98
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +2
Query: 254 REENQ-STTESGELNIEALIQNECNKLEVPPPITGEQLVDMIRQNLREYVNFERP 415
RE Q S T + EL +L+ N +P + E + DM++QNL E+ P
Sbjct: 38 RENRQTSITINPELLESSLLHNSTIHRTLPLSVFREIVEDMVKQNLAEWTEKRNP 92
>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2812
Score = 28.3 bits (60), Expect = 1.3
Identities = 17/73 (23%), Positives = 31/73 (42%)
Frame = +2
Query: 191 RWSPKVIWITDVKRDAPRTKDREENQSTTESGELNIEALIQNECNKLEVPPPITGEQLVD 370
R+ P W+ R + K + EN + ESG + +A + + V E+ +
Sbjct: 2713 RYDPLFSWLISPLRRMKKQKMQLENFNQPESGNITTDASRDPKIQRNNVSGESEAERAIL 2772
Query: 371 MIRQNLREYVNFE 409
+RQ L ++ E
Sbjct: 2773 KVRQKLSSTLSVE 2785
>SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr
1|||Manual
Length = 468
Score = 26.2 bits (55), Expect = 5.2
Identities = 15/62 (24%), Positives = 28/62 (45%)
Frame = +2
Query: 224 VKRDAPRTKDREENQSTTESGELNIEALIQNECNKLEVPPPITGEQLVDMIRQNLREYVN 403
+K+ P+ K + N + +S LN+ E + + VP P T Q+ + Q +
Sbjct: 350 LKKSKPK-KSNKSNNNQADSDRLNLSFGTIKEFDFVGVPAPFTKSQVDSAVEQLKSRIAH 408
Query: 404 FE 409
F+
Sbjct: 409 FK 410
>SPAC1D4.09c |||DUF602 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 240
Score = 26.2 bits (55), Expect = 5.2
Identities = 16/63 (25%), Positives = 27/63 (42%)
Frame = +1
Query: 94 CKDLPEDTAKLLINPNEDDISVTPLVVLFLQLEMVAKSYLDNRRKTRRAKDKRPRRESID 273
C + E+ + INPN + + +L L L S +K+ + DK+ + S
Sbjct: 144 CNQVYEEKDVIPINPNAEQLKTLSKRLLDLALSEKTHSLNKASKKSNKNGDKKRKHVSKS 203
Query: 274 NRK 282
N K
Sbjct: 204 NSK 206
>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2344
Score = 25.8 bits (54), Expect = 6.9
Identities = 17/74 (22%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Frame = +2
Query: 293 NIEALIQNECNKLEVPPPITGEQL-VDMIRQNLR-EYVNFERPLHDDEIDGSTSSLCLTK 466
N++ I +E + + P + E+ +D+ ++R E +FE P +++ID S +
Sbjct: 1394 NLQVSI-DEATQTDFPLVFSPERSSIDINASSMRSEKASFEIPFPEEQIDDDVSPVAQDS 1452
Query: 467 ALIDAFTQSNVIDI 508
+L + ++ID+
Sbjct: 1453 SLEELLISLDIIDL 1466
>SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 793
Score = 25.8 bits (54), Expect = 6.9
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -2
Query: 634 NQNESSNFTHLRYVLLAQPVFQTLIFPNRTEL 539
N N SSNF+ LA+PV Q +++ N + +
Sbjct: 297 NSNASSNFSLWHNEPLAEPVVQNVLWVNTSSV 328
>SPAC27F1.02c |cdc8|fus4|tropomyosin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 161
Score = 25.4 bits (53), Expect = 9.2
Identities = 16/67 (23%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Frame = +1
Query: 97 KDLPEDTAKLLINPNEDDISVTPLVVLFLQLEMVAKSYLDNRRKTRRAKDK-RPRRESID 273
++L E+T +L + + +DI T L ++E++ + N + R +K R +
Sbjct: 58 EELEEETKQLRLKADNEDIQKTEAEQLSRKVELLEEELETNDKLLRETTEKMRQTDVKAE 117
Query: 274 NRKRRTQ 294
+ +RR Q
Sbjct: 118 HFERRVQ 124
>SPAC31A2.12 |||arrestin/PY protein 1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 596
Score = 25.4 bits (53), Expect = 9.2
Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
Frame = -2
Query: 658 QHDLQ-SLKNQNESSNFTHLRYVLLAQPVFQTLIFPNRTELSLVWQ----INSPLNIYDI 494
+H L+ S+ +N + + LR L + +F +R E+ + + N PL Y
Sbjct: 290 RHKLKFSVSLRNPDGHISELRAALPVVLMIPPQLFGDRAEVESLRENFESFNQPLPSYQN 349
Query: 493 ALRERVYKGFS 461
++ +R+Y G S
Sbjct: 350 SMYDRLYDGLS 360
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,787,168
Number of Sequences: 5004
Number of extensions: 54389
Number of successful extensions: 202
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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