Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30758
(776 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_28981| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.11
SB_52106| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0098) 32 0.45
SB_12216| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_27150| Best HMM Match : VWA (HMM E-Value=1.1e-13) 29 4.2
SB_21157| Best HMM Match : Laminin_EGF (HMM E-Value=0.036) 29 4.2
SB_41336| Best HMM Match : Laminin_EGF (HMM E-Value=0.036) 29 4.2
SB_34001| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_17319| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_3226| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=0.021) 29 5.5
SB_49641| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.5
SB_29377| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.3
SB_25938| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.3
SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0) 28 7.3
SB_24662| Best HMM Match : DUF229 (HMM E-Value=1.2e-26) 28 7.3
SB_19075| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.3
SB_42689| Best HMM Match : Spectrin (HMM E-Value=0) 28 9.7
SB_17027| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.7
SB_49663| Best HMM Match : TolA (HMM E-Value=0.059) 28 9.7
SB_42043| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.7
>SB_28981| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 655
Score = 34.3 bits (75), Expect = 0.11
Identities = 20/72 (27%), Positives = 36/72 (50%)
Frame = +2
Query: 239 PRTKDREENQSTTESGELNIEALIQNECNKLEVPPPITGEQLVDMIRQNLREYVNFERPL 418
P+ K + +S TE GE+NIEA I NE ++E + Q I Q + V+ ++ +
Sbjct: 415 PKPKKKPNGESVTEDGEVNIEAGIANE-EQVEQEEALNDSQRSGEINQAEEDDVDKDKDV 473
Query: 419 HDDEIDGSTSSL 454
+ D +++
Sbjct: 474 EEKAADAIVNTV 485
>SB_52106| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0098)
Length = 1177
Score = 32.3 bits (70), Expect = 0.45
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Frame = +1
Query: 22 WLSHEKDTSTQVSEALIKIFVAQICKDLPEDTAKLLINPNEDDISVTPLVVLFLQLEMVA 201
WL +K++ Q+ E + CK L ++ KL N ++ D+S V FL+ +
Sbjct: 486 WLKQDKESHKQIEER------EKECKSLRDEVRKLRDNLSKQDLSRNDEVAGFLKERELL 539
Query: 202 KSYLDNRRKTRR-AKDKRPRRESIDNRKRR 288
+ L RR T +K + RRE +++RR
Sbjct: 540 RKEL--RRITEELSKQESARREEQADQERR 567
>SB_12216| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2992
Score = 29.5 bits (63), Expect = 3.2
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = -2
Query: 661 NQHD-LQSLKNQNESSNFTHLRYVLLAQPVFQTLIFPNRTELSLVWQ 524
N H+ + S++N N N T ++YV A P T + TEL ++W+
Sbjct: 2036 NVHENITSVQNGNVHDNITTVQYVPAAPPSNITANNVSSTELEVIWR 2082
>SB_27150| Best HMM Match : VWA (HMM E-Value=1.1e-13)
Length = 600
Score = 29.1 bits (62), Expect = 4.2
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +2
Query: 347 ITGEQLVDMIRQNLREYVNFERPLHDDEI 433
+ G LVD++RQ R V E+P HD EI
Sbjct: 487 VRGVLLVDLLRQPGRVRVALEQPKHDKEI 515
>SB_21157| Best HMM Match : Laminin_EGF (HMM E-Value=0.036)
Length = 897
Score = 29.1 bits (62), Expect = 4.2
Identities = 16/38 (42%), Positives = 25/38 (65%)
Frame = +1
Query: 157 VTPLVVLFLQLEMVAKSYLDNRRKTRRAKDKRPRRESI 270
+T LVV+FL L +VA + NR+K+R DKR + + +
Sbjct: 271 ITQLVVVFLVLALVAVVVILNRKKSR--DDKRSQTDHL 306
>SB_41336| Best HMM Match : Laminin_EGF (HMM E-Value=0.036)
Length = 367
Score = 29.1 bits (62), Expect = 4.2
Identities = 16/38 (42%), Positives = 25/38 (65%)
Frame = +1
Query: 157 VTPLVVLFLQLEMVAKSYLDNRRKTRRAKDKRPRRESI 270
+T LVV+FL L +VA + NR+K+R DKR + + +
Sbjct: 186 ITQLVVVFLVLALVAVVVILNRKKSR--DDKRSQTDHL 221
>SB_34001| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 117
Score = 29.1 bits (62), Expect = 4.2
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +2
Query: 263 NQSTTESGELNIEALIQNECNKLEVPPPI 349
N ++ ES EL A +CNK E PP +
Sbjct: 57 NHASLESMELQTPAFFLYQCNKYEAPPTV 85
>SB_17319| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 117
Score = 29.1 bits (62), Expect = 4.2
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +2
Query: 263 NQSTTESGELNIEALIQNECNKLEVPPPI 349
N ++ ES EL A +CNK E PP +
Sbjct: 57 NHASLESMELQTPAFFLYQCNKYEAPPTV 85
>SB_3226| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=0.021)
Length = 1217
Score = 28.7 bits (61), Expect = 5.5
Identities = 16/38 (42%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Frame = +1
Query: 184 QLEMVAKSYLDNRRKTRRAKDKRPRRE-SIDNRKRRTQ 294
+LE V K L+ RRK RR KD++ R++ ++ K+R Q
Sbjct: 729 KLEQVRKERLEVRRK-RRIKDRKERKKIEMEEAKKREQ 765
>SB_49641| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 755
Score = 28.7 bits (61), Expect = 5.5
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = -2
Query: 652 DLQSLKNQNESSNFTHLRYVLLAQPVFQTLIFPNRTELSL 533
D Q + +NES N+ L PV+Q L+ PNR L
Sbjct: 709 DKQGSRIKNESPNYLSLEGQGQEPPVYQALVGPNRATQGL 748
>SB_29377| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 548
Score = 28.3 bits (60), Expect = 7.3
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +1
Query: 217 NRRKTRRAKDKRPRRESIDNRKRR 288
+RR R++D+RPRR S D + R
Sbjct: 221 SRRSRSRSRDRRPRRRSRDRERSR 244
>SB_25938| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 447
Score = 28.3 bits (60), Expect = 7.3
Identities = 15/27 (55%), Positives = 17/27 (62%)
Frame = +1
Query: 28 SHEKDTSTQVSEALIKIFVAQICKDLP 108
S DTST VSE IK+ V Q +DLP
Sbjct: 311 SRSTDTSTDVSEEFIKVSV-QYAEDLP 336
>SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 514
Score = 28.3 bits (60), Expect = 7.3
Identities = 13/21 (61%), Positives = 16/21 (76%)
Frame = +1
Query: 235 RAKDKRPRRESIDNRKRRTQY 297
R + + PRRESID RKRR+ Y
Sbjct: 97 RRRSRSPRRESID-RKRRSSY 116
>SB_24662| Best HMM Match : DUF229 (HMM E-Value=1.2e-26)
Length = 972
Score = 28.3 bits (60), Expect = 7.3
Identities = 15/27 (55%), Positives = 17/27 (62%)
Frame = +1
Query: 28 SHEKDTSTQVSEALIKIFVAQICKDLP 108
S DTST VSE IK+ V Q +DLP
Sbjct: 311 SRSTDTSTDVSEEFIKVSV-QYAEDLP 336
>SB_19075| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6500
Score = 28.3 bits (60), Expect = 7.3
Identities = 10/39 (25%), Positives = 24/39 (61%)
Frame = +1
Query: 58 SEALIKIFVAQICKDLPEDTAKLLINPNEDDISVTPLVV 174
++ ++ + V ++ D P DT L+ ++++I V P+V+
Sbjct: 5321 TKKVVVVIVDRVPSDAPRDTQAALVPMDKENIKVVPVVI 5359
>SB_42689| Best HMM Match : Spectrin (HMM E-Value=0)
Length = 1317
Score = 27.9 bits (59), Expect = 9.7
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +1
Query: 193 MVAKSYLDNRRKTRRAKDKRPRRESIDNRKRRTQ 294
M +SYL N R+A +R +RE + RKR +
Sbjct: 1099 MAQESYLRNENLGRQAAHERQQREEPEQRKREEE 1132
>SB_17027| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 297
Score = 27.9 bits (59), Expect = 9.7
Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Frame = +1
Query: 115 TAKLLINPNEDD-ISVT-PLVVLFLQLEMVAKSYLDNRRKTRRAKDKRPRRES 267
T K+L +EDD I V PLV L L L A ++ RR+ R+ + P+R S
Sbjct: 58 TVKVLTITSEDDSIGVLLPLVCLALFLFSAAFAFRCQRRRERKYRVSSPQRVS 110
>SB_49663| Best HMM Match : TolA (HMM E-Value=0.059)
Length = 591
Score = 27.9 bits (59), Expect = 9.7
Identities = 25/94 (26%), Positives = 44/94 (46%), Gaps = 2/94 (2%)
Frame = +1
Query: 19 TWLSHEKDTSTQVSEALIKIFVAQICKDLPEDTAKLLINPNEDDISVTPLVVLFLQLEMV 198
T EK+T Q+ E F AQ+ +L + AK E ++LF ++
Sbjct: 225 TLQEQEKETIQQLEED----FKAQL-NELEVEKAKEQTALEEMKSFTVKSIILFSRVYSK 279
Query: 199 AKSYLD--NRRKTRRAKDKRPRRESIDNRKRRTQ 294
K L+ NR++ R +++ R E ++ +R+TQ
Sbjct: 280 YKDILEARNRQRKREREEELERIERVEEMQRKTQ 313
>SB_42043| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 259
Score = 27.9 bits (59), Expect = 9.7
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +1
Query: 202 KSYLDNRRKTRRAKDKRPRRESIDNRKRRTQY*GSHTKR 318
+SY D R++R ++ RP RES + R+ H ++
Sbjct: 203 RSYRDRDRRSREEREPRPERESDRDSNRQKHQRDRHREK 241
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,187,125
Number of Sequences: 59808
Number of extensions: 397887
Number of successful extensions: 1358
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1346
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2119930593
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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