Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30758
         (776 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC011897-1|AAH11897.1|  488|Homo sapiens HSPB (heat shock 27kDa)...    31   3.5  
AY376900-1|AAQ85126.1|  516|Homo sapiens GTP-GDP dissociation st...    31   3.5  
L76937-1|AAC41981.1| 1432|Homo sapiens protein ( Homo sapiens We...    30   8.1  
AY818673-1|AAX21098.1| 1432|Homo sapiens Werner syndrome helicas...    30   8.1  
AY442327-1|AAR05448.1| 1432|Homo sapiens Werner syndrome protein.      30   8.1  
AF181897-1|AAF06162.1| 1432|Homo sapiens WRN protein.                  30   8.1  
AF091214-1|AAC63361.1| 1432|Homo sapiens WRN protein.                  30   8.1  

>BC011897-1|AAH11897.1|  488|Homo sapiens HSPB (heat shock 27kDa)
           associated protein 1 protein.
          Length = 488

 Score = 31.5 bits (68), Expect = 3.5
 Identities = 19/76 (25%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
 Frame = +1

Query: 1   LNISLNTWLSHEKDTSTQVSEALIKIFVAQI-CKDLPEDTAKLLINPNEDDISVTPLVVL 177
           + +S+N+W+  E+D   +V EA+ ++ V  +   + P++T +  +NP E  +  T   V 
Sbjct: 265 VTVSINSWIELEEDHLARVEEAITRMLVCALKTAENPQNT-RAWLNPTE--VEETSHAVN 321

Query: 178 FLQLEMVAKSYLDNRR 225
              L     ++ D  R
Sbjct: 322 CCYLNAAVSAFFDRCR 337


>AY376900-1|AAQ85126.1|  516|Homo sapiens GTP-GDP dissociation
           stimulator 1 isoform A protein.
          Length = 516

 Score = 31.5 bits (68), Expect = 3.5
 Identities = 20/56 (35%), Positives = 30/56 (53%)
 Frame = +1

Query: 4   NISLNTWLSHEKDTSTQVSEALIKIFVAQICKDLPEDTAKLLINPNEDDISVTPLV 171
           NI  ++  S E+  ST ++E L+K+F  QI  D  E T ++L    E+D     LV
Sbjct: 116 NICYDSQSSKEQFASTNIAEELVKLFKKQIEHDKREMTFEVLAPLAENDAIKLQLV 171


>L76937-1|AAC41981.1| 1432|Homo sapiens protein ( Homo sapiens Werner
            syndrome gene, complete cds. ).
          Length = 1432

 Score = 30.3 bits (65), Expect = 8.1
 Identities = 27/90 (30%), Positives = 41/90 (45%), Gaps = 2/90 (2%)
 Frame = +2

Query: 239  PRTKDREENQSTTESGELNIEALIQNECNKLEVPPPI--TGEQLVDMIRQNLREYVNFER 412
            P    +E+       G+L +EA  Q   NK++VPP I  T + LVDM +       N +R
Sbjct: 1143 PVISAQEQETQIVLYGKL-VEAR-QKHANKMDVPPAILATNKILVDMAKMRPTTVENVKR 1200

Query: 413  PLHDDEIDGSTSSLCLTKALIDAFTQSNVI 502
               D   +G  + L     +I  F Q+N +
Sbjct: 1201 --IDGVSEGKAAMLAPLLEVIKHFCQTNSV 1228


>AY818673-1|AAX21098.1| 1432|Homo sapiens Werner syndrome helicase
            protein.
          Length = 1432

 Score = 30.3 bits (65), Expect = 8.1
 Identities = 27/90 (30%), Positives = 41/90 (45%), Gaps = 2/90 (2%)
 Frame = +2

Query: 239  PRTKDREENQSTTESGELNIEALIQNECNKLEVPPPI--TGEQLVDMIRQNLREYVNFER 412
            P    +E+       G+L +EA  Q   NK++VPP I  T + LVDM +       N +R
Sbjct: 1143 PVISAQEQETQIVLYGKL-VEAR-QKHANKMDVPPAILATNKILVDMAKMRPTTVENVKR 1200

Query: 413  PLHDDEIDGSTSSLCLTKALIDAFTQSNVI 502
               D   +G  + L     +I  F Q+N +
Sbjct: 1201 --IDGVSEGKAAMLAPLLEVIKHFCQTNSV 1228


>AY442327-1|AAR05448.1| 1432|Homo sapiens Werner syndrome protein.
          Length = 1432

 Score = 30.3 bits (65), Expect = 8.1
 Identities = 27/90 (30%), Positives = 41/90 (45%), Gaps = 2/90 (2%)
 Frame = +2

Query: 239  PRTKDREENQSTTESGELNIEALIQNECNKLEVPPPI--TGEQLVDMIRQNLREYVNFER 412
            P    +E+       G+L +EA  Q   NK++VPP I  T + LVDM +       N +R
Sbjct: 1143 PVISAQEQETQIVLYGKL-VEAR-QKHANKMDVPPAILATNKILVDMAKMRPTTVENVKR 1200

Query: 413  PLHDDEIDGSTSSLCLTKALIDAFTQSNVI 502
               D   +G  + L     +I  F Q+N +
Sbjct: 1201 --IDGVSEGKAAMLAPLLEVIKHFCQTNSV 1228


>AF181897-1|AAF06162.1| 1432|Homo sapiens WRN protein.
          Length = 1432

 Score = 30.3 bits (65), Expect = 8.1
 Identities = 27/90 (30%), Positives = 41/90 (45%), Gaps = 2/90 (2%)
 Frame = +2

Query: 239  PRTKDREENQSTTESGELNIEALIQNECNKLEVPPPI--TGEQLVDMIRQNLREYVNFER 412
            P    +E+       G+L +EA  Q   NK++VPP I  T + LVDM +       N +R
Sbjct: 1143 PVISAQEQETQIVLYGKL-VEAR-QKHANKMDVPPAILATNKILVDMAKMRPTTVENVKR 1200

Query: 413  PLHDDEIDGSTSSLCLTKALIDAFTQSNVI 502
               D   +G  + L     +I  F Q+N +
Sbjct: 1201 --IDGVSEGKAAMLAPLLEVIKHFCQTNSV 1228


>AF091214-1|AAC63361.1| 1432|Homo sapiens WRN protein.
          Length = 1432

 Score = 30.3 bits (65), Expect = 8.1
 Identities = 27/90 (30%), Positives = 41/90 (45%), Gaps = 2/90 (2%)
 Frame = +2

Query: 239  PRTKDREENQSTTESGELNIEALIQNECNKLEVPPPI--TGEQLVDMIRQNLREYVNFER 412
            P    +E+       G+L +EA  Q   NK++VPP I  T + LVDM +       N +R
Sbjct: 1143 PVISAQEQETQIVLYGKL-VEAR-QKHANKMDVPPAILATNKILVDMAKMRPTTVENVKR 1200

Query: 413  PLHDDEIDGSTSSLCLTKALIDAFTQSNVI 502
               D   +G  + L     +I  F Q+N +
Sbjct: 1201 --IDGVSEGKAAMLAPLLEVIKHFCQTNSV 1228


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,503,091
Number of Sequences: 237096
Number of extensions: 1635485
Number of successful extensions: 4102
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3921
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4098
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9423020542
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)