Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30758
         (776 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014297-4166|AAF56739.2|  458|Drosophila melanogaster CG12879-P...    35   0.14 
AY118636-1|AAM50005.1| 1238|Drosophila melanogaster SD02122p pro...    29   5.4  
AJ271845-1|CAB76376.1| 1238|Drosophila melanogaster SMC1 protein...    29   5.4  
AF225909-1|AAF43149.1| 1238|Drosophila melanogaster cohesin subu...    29   5.4  
AE014297-3454|AAF56231.1| 1238|Drosophila melanogaster CG6057-PA...    29   5.4  
AY119147-1|AAM51007.1| 1209|Drosophila melanogaster RE53611p pro...    29   9.4  

>AE014297-4166|AAF56739.2|  458|Drosophila melanogaster CG12879-PA
           protein.
          Length = 458

 Score = 34.7 bits (76), Expect = 0.14
 Identities = 22/82 (26%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
 Frame = +1

Query: 4   NISLNTWLSHEKDTSTQVSEALIKIFVAQICKDLPEDTAKLLINPNE-DDISVTPLVVLF 180
           ++S+N W+  + D    + E L+   V    +       + L+NPN+ D++S  P   LF
Sbjct: 291 SLSVNYWVPLKVDMDLILDEFLVMHIVESFVRGESNQVKQYLLNPNQLDNVSTKP-SDLF 349

Query: 181 LQLEMVAKSYLDNRRKTRRAKD 246
            Q E   ++ L++ + TR+  D
Sbjct: 350 AQFEQAVQN-LESGKSTRQLYD 370


>AY118636-1|AAM50005.1| 1238|Drosophila melanogaster SD02122p
           protein.
          Length = 1238

 Score = 29.5 bits (63), Expect = 5.4
 Identities = 22/78 (28%), Positives = 36/78 (46%)
 Frame = +2

Query: 215 ITDVKRDAPRTKDREENQSTTESGELNIEALIQNECNKLEVPPPITGEQLVDMIRQNLRE 394
           + DV+    R +D  EN+S      +N+E  +  E ++L+     T  Q     R  L +
Sbjct: 363 LADVEALKKRFEDEIENESQRRGKSVNMEEGLVQEYDRLKQEAEATATQ----YRSEL-D 417

Query: 395 YVNFERPLHDDEIDGSTS 448
            VN E+    D +DG T+
Sbjct: 418 SVNREQKSEQDTLDGETN 435


>AJ271845-1|CAB76376.1| 1238|Drosophila melanogaster SMC1 protein
           protein.
          Length = 1238

 Score = 29.5 bits (63), Expect = 5.4
 Identities = 22/78 (28%), Positives = 36/78 (46%)
 Frame = +2

Query: 215 ITDVKRDAPRTKDREENQSTTESGELNIEALIQNECNKLEVPPPITGEQLVDMIRQNLRE 394
           + DV+    R +D  EN+S      +N+E  +  E ++L+     T  Q     R  L +
Sbjct: 363 LADVEALKKRFEDEIENESQRRGKSVNMEEGLVQEYDRLKQEAEATATQ----YRSEL-D 417

Query: 395 YVNFERPLHDDEIDGSTS 448
            VN E+    D +DG T+
Sbjct: 418 SVNREQKSEQDTLDGETN 435


>AF225909-1|AAF43149.1| 1238|Drosophila melanogaster cohesin subunit
           protein.
          Length = 1238

 Score = 29.5 bits (63), Expect = 5.4
 Identities = 22/78 (28%), Positives = 36/78 (46%)
 Frame = +2

Query: 215 ITDVKRDAPRTKDREENQSTTESGELNIEALIQNECNKLEVPPPITGEQLVDMIRQNLRE 394
           + DV+    R +D  EN+S      +N+E  +  E ++L+     T  Q     R  L +
Sbjct: 363 LADVEALKKRFEDEIENESQRRGKSVNMEEGLVQEYDRLKQEAEATATQ----YRSEL-D 417

Query: 395 YVNFERPLHDDEIDGSTS 448
            VN E+    D +DG T+
Sbjct: 418 SVNREQKSEQDTLDGETN 435


>AE014297-3454|AAF56231.1| 1238|Drosophila melanogaster CG6057-PA
           protein.
          Length = 1238

 Score = 29.5 bits (63), Expect = 5.4
 Identities = 22/78 (28%), Positives = 36/78 (46%)
 Frame = +2

Query: 215 ITDVKRDAPRTKDREENQSTTESGELNIEALIQNECNKLEVPPPITGEQLVDMIRQNLRE 394
           + DV+    R +D  EN+S      +N+E  +  E ++L+     T  Q     R  L +
Sbjct: 363 LADVEALKKRFEDEIENESQRRGKSVNMEEGLVQEYDRLKQEAEATATQ----YRSEL-D 417

Query: 395 YVNFERPLHDDEIDGSTS 448
            VN E+    D +DG T+
Sbjct: 418 SVNREQKSEQDTLDGETN 435


>AY119147-1|AAM51007.1| 1209|Drosophila melanogaster RE53611p
           protein.
          Length = 1209

 Score = 28.7 bits (61), Expect = 9.4
 Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = +1

Query: 109 EDTAKLLIN-PNEDDISVTPLVVLFLQLEMVAKSYLDNRRKTRRAKDKRPRRESIDNR 279
           E  A +L++ P+ +D+ VTP   +   L  V  + L         K +RP + S  +R
Sbjct: 586 EQEASILVDRPHGEDLIVTPFAQILASLRSVRNNLLSLTNVPASNKSRRPNQSSSASR 643


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,265,635
Number of Sequences: 53049
Number of extensions: 568360
Number of successful extensions: 1720
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1714
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3602427675
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)