Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30758
         (776 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81138-6|CAB03476.2|  515|Caenorhabditis elegans Hypothetical pr...    35   0.056
AL023844-14|CAO82065.1|  515|Caenorhabditis elegans Hypothetical...    35   0.056
AF003388-1|AAW88390.1| 2779|Caenorhabditis elegans Hypothetical ...    29   2.8  
Z75541-3|CAA99855.1| 1425|Caenorhabditis elegans Hypothetical pr...    28   6.5  
AF043706-1|AAB97603.3| 1623|Caenorhabditis elegans Hypothetical ...    28   6.5  
U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated p...    28   8.6  
U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin pr...    28   8.6  

>Z81138-6|CAB03476.2|  515|Caenorhabditis elegans Hypothetical
           protein W05B2.7 protein.
          Length = 515

 Score = 35.1 bits (77), Expect = 0.056
 Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 4/54 (7%)
 Frame = -3

Query: 504 SMTLLCVNASIRALVKQRLEVDPSISSSCKGRSK----LTYSRRFCLIMSTSCS 355
           ++TL+CV+     L  Q ++ D S++SS    ++    L  SRRFCL +ST+ S
Sbjct: 310 AVTLICVSMCTSHLTSQNVQFDSSMASSSNVINRILRTLKSSRRFCLFLSTTDS 363


>AL023844-14|CAO82065.1|  515|Caenorhabditis elegans Hypothetical
           protein W05B2.7 protein.
          Length = 515

 Score = 35.1 bits (77), Expect = 0.056
 Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 4/54 (7%)
 Frame = -3

Query: 504 SMTLLCVNASIRALVKQRLEVDPSISSSCKGRSK----LTYSRRFCLIMSTSCS 355
           ++TL+CV+     L  Q ++ D S++SS    ++    L  SRRFCL +ST+ S
Sbjct: 310 AVTLICVSMCTSHLTSQNVQFDSSMASSSNVINRILRTLKSSRRFCLFLSTTDS 363


>AF003388-1|AAW88390.1| 2779|Caenorhabditis elegans Hypothetical
            protein R10F2.1 protein.
          Length = 2779

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
 Frame = +1

Query: 100  DLPEDTAKLLINPNEDDISVTPLVVL-FLQLEMVAKSYLDNRRKTRRAKDKR 252
            D+     KLL++     I+V  L++L FL + ++      +RRKT+  K+K+
Sbjct: 2538 DVQPSLPKLLLHSKPVQIAVASLILLLFLLIVVICICMCKSRRKTQNEKEKK 2589


>Z75541-3|CAA99855.1| 1425|Caenorhabditis elegans Hypothetical
           protein F52B5.3 protein.
          Length = 1425

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
 Frame = +1

Query: 91  ICKDLPEDTAKLLINPNEDDISVTPLVVLF-LQLEMVAKSYLDNRRKTRRAKDKRPRRES 267
           I K +P+DT K+++  N  + S+T   V+F +    V +   D+  K      K   R +
Sbjct: 694 IFKSVPKDTRKIILATNIAEASITIEDVIFVVDTGKVKEKSFDHEAKLSTLTVKPIARSN 753

Query: 268 IDNRKRR 288
            D R  R
Sbjct: 754 ADQRSGR 760


>AF043706-1|AAB97603.3| 1623|Caenorhabditis elegans Hypothetical
            protein ZC123.3 protein.
          Length = 1623

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 14/61 (22%), Positives = 29/61 (47%)
 Frame = +2

Query: 209  IWITDVKRDAPRTKDREENQSTTESGELNIEALIQNECNKLEVPPPITGEQLVDMIRQNL 388
            +W  + +    +T+   +  S   SGEL+ E   +    +L +   +  EQ ++ +R NL
Sbjct: 1392 VWFQNARAKERKTRGAVDEDS--RSGELHCEICDKTFATRLSLQDHLFAEQHIEFLRNNL 1449

Query: 389  R 391
            +
Sbjct: 1450 K 1450


>U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated
            protein 44, isoform f protein.
          Length = 6994

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 20/69 (28%), Positives = 32/69 (46%)
 Frame = +2

Query: 224  VKRDAPRTKDREENQSTTESGELNIEALIQNECNKLEVPPPITGEQLVDMIRQNLREYVN 403
            VK D     D+E  +S  ESGE   +   + E ++ + P     E +     ++  E V 
Sbjct: 3935 VKSDHYTEDDQESLKSPKESGEAFSQFTSEKEQDRSDSPIHSQKEDISQFQNESSPEDVK 3994

Query: 404  FERPLHDDE 430
             E+P HD+E
Sbjct: 3995 SEQP-HDEE 4002


>U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin
            protein.
          Length = 6994

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 20/69 (28%), Positives = 32/69 (46%)
 Frame = +2

Query: 224  VKRDAPRTKDREENQSTTESGELNIEALIQNECNKLEVPPPITGEQLVDMIRQNLREYVN 403
            VK D     D+E  +S  ESGE   +   + E ++ + P     E +     ++  E V 
Sbjct: 3935 VKSDHYTEDDQESLKSPKESGEAFSQFTSEKEQDRSDSPIHSQKEDISQFQNESSPEDVK 3994

Query: 404  FERPLHDDE 430
             E+P HD+E
Sbjct: 3995 SEQP-HDEE 4002


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,143,287
Number of Sequences: 27780
Number of extensions: 293992
Number of successful extensions: 993
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 938
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 993
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1872168044
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)