Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30758
         (776 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M12598-1|AAA27733.1|   77|Apis mellifera protein ( Bee preprosec...    25   0.79 
AY082691-1|AAL92482.1|   77|Apis mellifera preprosecapin protein.      25   0.79 
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        23   2.4  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    23   4.2  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    23   4.2  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   5.5  

>M12598-1|AAA27733.1|   77|Apis mellifera protein ( Bee
           preprosecapin mRNA, complete cds. ).
          Length = 77

 Score = 25.0 bits (52), Expect = 0.79
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = -2

Query: 631 QNESSNFTHLRYVLLAQPVFQTLIFPNRTE 542
           +N S N THL  VLL   V   LI P++ E
Sbjct: 2   KNYSKNATHLITVLLFSFVVILLIIPSKCE 31


>AY082691-1|AAL92482.1|   77|Apis mellifera preprosecapin protein.
          Length = 77

 Score = 25.0 bits (52), Expect = 0.79
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = -2

Query: 631 QNESSNFTHLRYVLLAQPVFQTLIFPNRTE 542
           +N S N THL  VLL   V   LI P++ E
Sbjct: 2   KNYSKNATHLITVLLFSFVVILLIIPSKCE 31


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -3

Query: 141 VRIYQQFCCIFRKILTYLCYKYFDESFRHLS 49
           +RI +Q     +K+L Y  YKY D     LS
Sbjct: 281 LRIARQMTTSRKKVLPYYWYKYQDRRDTDLS 311


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -3

Query: 378 LIMSTSCSPVIGGGTSSLLHSFCM 307
           L+M   C   +G    SLLH  CM
Sbjct: 96  LVMGILCKKTLGTSAGSLLH-ICM 118


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -2

Query: 55  PELMYLFHEIARYSEIC 5
           PE+  LF +I  ++EIC
Sbjct: 488 PEVTMLFSDIVGFTEIC 504


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +3

Query: 246  QKTAKRINRQPKAENSILRLSYKTSVISW 332
            Q TA+ +  QP  + +   L+ +T  ISW
Sbjct: 1074 QHTAEGVPEQPPHDTTCTTLTSQTIRISW 1102


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,917
Number of Sequences: 438
Number of extensions: 3861
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24396777
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)