Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30758
         (776 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g01160.1 68416.m00020 expressed protein                             29   3.4  
At5g40710.1 68418.m04941 zinc finger (C2H2 type) family protein ...    28   6.0  
At3g21850.1 68416.m02754 E3 ubiquitin ligase SCF complex subunit...    28   7.9  

>At3g01160.1 68416.m00020 expressed protein
          Length = 380

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
 Frame = +1

Query: 28  SHEKDTSTQVSEALIKIFVAQICKDLPEDT---AKLLINPNEDDISVTPLVVLFLQLEMV 198
           S +KD       ALI+       KDL E+     ++  N   +D+S   L     Q E V
Sbjct: 87  SKKKDKKKDKYRALIEAEDVDSDKDLEEENDQDMEVTFNTGLEDLSKEILKKKDNQSESV 146

Query: 199 AKSYLDNRRKTRRAKDKRPR 258
            ++YL  RR+ +RA+  + +
Sbjct: 147 WETYLRQRREKKRARKNKQK 166


>At5g40710.1 68418.m04941 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 272

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -3

Query: 393 SRRFCLIMSTSCSPVIGGGTSSLLHSFCMR 304
           +R  C  ++ SC PV  G +++ LH F +R
Sbjct: 172 NRHLCESLANSCFPVNKGSSANRLHDFFLR 201


>At3g21850.1 68416.m02754 E3 ubiquitin ligase SCF complex subunit
           SKP1/ASK1 (At9), putative E3 ubiquitin ligase; similar
           to Skp1 homolog SKP1a GI:3068807 from [Arabidopsis
           thaliana]
          Length = 153

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/60 (23%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = +2

Query: 257 EENQSTTESGELNIEALIQNECNKLEVP-PPITGEQLVDMIRQNLREYVNFERPLHDDEI 433
           E  +      ++ I  + +N+C    +P P +TG+ L  +I    + +V+   P  DD++
Sbjct: 17  EVEEEAARQCQIIIAHMSENDCTDNGIPLPNVTGKILAMVIEYCNKHHVDAANPCSDDDL 76


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,189,635
Number of Sequences: 28952
Number of extensions: 272411
Number of successful extensions: 851
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 822
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 851
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1736283200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)