Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30756
(730 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1683.07 |mal1||alpha-glucosidase Mal1 |Schizosaccharomyces p... 50 4e-07
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p... 33 0.055
SPCC290.02 |rpc34||DNA-directed RNA polymerase III complex subun... 28 1.6
SPAC1002.18 |urg3||DUF1688 family protein|Schizosaccharomyces po... 27 2.7
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 26 4.8
SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family |S... 26 4.8
SPCP31B10.04 |||conserved fungal protein|Schizosaccharomyces pom... 25 8.4
SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3' ss-tail|S... 25 8.4
SPBC1734.05c |spf31||DNAJ protein Spf31|Schizosaccharomyces pomb... 25 8.4
SPAC23C11.09 |||alanine-tRNA ligase |Schizosaccharomyces pombe|c... 25 8.4
>SPBC1683.07 |mal1||alpha-glucosidase Mal1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 579
Score = 49.6 bits (113), Expect = 4e-07
Identities = 23/63 (36%), Positives = 34/63 (53%)
Frame = +3
Query: 270 PANWVSKINTPAFTRSDKRQMFYLHQFCDNCADLNFDNPKVVEKFDMVLKAWMGAGASGV 449
P NW S +T A+ + Q +YLH + DLN++ PKV E +L+ W+ G G
Sbjct: 150 PNNWRSYFDTSAWEWDEATQEYYLHLWSVGQPDLNWETPKVREAVHDILRFWLDRGVDGF 209
Query: 450 RLN 458
RL+
Sbjct: 210 RLD 212
Score = 37.9 bits (84), Expect = 0.001
Identities = 17/61 (27%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Frame = +1
Query: 76 ADLRMLDKR-DTLDEFKILFNKIKKIGVRVIVDLIPNYVFTNHTWFVQSENS-TEPYTDY 249
+D + +D R TL++ L + + +++++DL+ N+ H WF +S +S T P D+
Sbjct: 74 SDYKQIDSRYGTLEDLDRLMKALHERDMKLVMDLVLNHTSDQHEWFKESRSSKTNPKRDW 133
Query: 250 F 252
+
Sbjct: 134 Y 134
>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1098
Score = 32.7 bits (71), Expect = 0.055
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +1
Query: 157 RVIVDLIPNYVFTNHTWFVQSENSTEPYTDYF 252
R I+D++ NY+F+ + V E E YTD+F
Sbjct: 456 RAILDILNNYIFSCPLFLVTPEELEEQYTDFF 487
>SPCC290.02 |rpc34||DNA-directed RNA polymerase III complex subunit
Rpc34|Schizosaccharomyces pombe|chr 3|||Manual
Length = 301
Score = 27.9 bits (59), Expect = 1.6
Identities = 14/51 (27%), Positives = 25/51 (49%)
Frame = +1
Query: 82 LRMLDKRDTLDEFKILFNKIKKIGVRVIVDLIPNYVFTNHTWFVQSENSTE 234
L+ L+ ++ + K + N +KI ++ DL+P+ T WF E E
Sbjct: 122 LKSLESKNLVKSIKSVKNPTRKI--YMLYDLVPSTELTGGPWFTDQELDVE 170
>SPAC1002.18 |urg3||DUF1688 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 399
Score = 27.1 bits (57), Expect = 2.7
Identities = 7/21 (33%), Positives = 15/21 (71%)
Frame = +2
Query: 551 WEHKHTTDLPKLKELLARWSK 613
W+H ++P+L +L+++W K
Sbjct: 69 WQHFEVGNVPRLSQLVSKWEK 89
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 26.2 bits (55), Expect = 4.8
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = +2
Query: 584 LKELLARWSKIVTKESEPTVFTLKEDGSLPDLILLNHNVSM 706
LK+L R++KI + S+P V + + PDL+ N +S+
Sbjct: 617 LKDLRERFAKIEIQASQPLVPYRETTIATPDLLAKNKELSI 657
>SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 373
Score = 26.2 bits (55), Expect = 4.8
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +2
Query: 578 PKLKELLARWSKIVTKESEPTVFTLKEDGSLP 673
P LKEL+A K+VTKE+ + E+ SLP
Sbjct: 255 PNLKELIASSRKVVTKETASSKRKSDEE-SLP 285
>SPCP31B10.04 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 287
Score = 25.4 bits (53), Expect = 8.4
Identities = 9/30 (30%), Positives = 16/30 (53%)
Frame = +1
Query: 322 NVRCSTCISSVTTALILTSIILKLLRSSTW 411
N++ + + SV LIL +++ R TW
Sbjct: 199 NIKAAIAVPSVILGLILVALVYYAYRKDTW 228
>SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3'
ss-tail|Schizosaccharomyces pombe|chr 3|||Manual
Length = 957
Score = 25.4 bits (53), Expect = 8.4
Identities = 18/60 (30%), Positives = 29/60 (48%)
Frame = +2
Query: 548 FWEHKHTTDLPKLKELLARWSKIVTKESEPTVFTLKEDGSLPDLILLNHNVSMLAGRRSA 727
FW K+ LPK+++ + +V++ S P V L+E G + +L LA R A
Sbjct: 880 FWALKYIERLPKVQKNIYHGYLMVSELSTPQVM-LEELGVKAHIDILPDEAFRLANTRQA 938
>SPBC1734.05c |spf31||DNAJ protein Spf31|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 209
Score = 25.4 bits (53), Expect = 8.4
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +3
Query: 366 DLNFDNPKVVEKFDMVLKA 422
D N DNPK + FD++ KA
Sbjct: 61 DKNRDNPKAADAFDILKKA 79
>SPAC23C11.09 |||alanine-tRNA ligase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 959
Score = 25.4 bits (53), Expect = 8.4
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +2
Query: 467 SLARRIA*GEDARRRGSSVDADHMRYDFWEHKHTTDLPKL 586
+LA R G+ +RGS V + +R+DF +K + + KL
Sbjct: 613 NLALRNTLGDGIDQRGSLVSQEKLRFDF-SYKSSIPIDKL 651
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,726,819
Number of Sequences: 5004
Number of extensions: 52894
Number of successful extensions: 187
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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